Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0467
         (696 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   2.4  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     22   4.2  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    22   4.2  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    22   4.2  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           22   4.2  
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    22   4.2  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    22   5.5  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    22   5.5  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 12/36 (33%), Positives = 14/36 (38%)
 Frame = +1

Query: 388  HLCVRYTRRSPAERP*RKPYCRSLISWRSSRYLRSW 495
            H C  Y R    E   RK YC   + W   R +  W
Sbjct: 1113 HNCNAYYRCVLGEL--RKQYCAGGLHWNKERKICDW 1146


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 226 HHSCRRRLLLRYHDHQRWCS 167
           HH  +++L   YH+HQ + S
Sbjct: 53  HHIQQQQLQYGYHNHQNYNS 72


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 226 HHSCRRRLLLRYHDHQRWCS 167
           HH  +++L   YH+HQ + S
Sbjct: 53  HHIQQQQLQYGYHNHQNYNS 72


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 223 DAPSIQKASDPLQSPSG 273
           +APS+  AS P  SPSG
Sbjct: 192 NAPSVSPASLPSISPSG 208


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 226 HHSCRRRLLLRYHDHQRWCS 167
           HH  +++L   YH+HQ + S
Sbjct: 53  HHIQQQQLQYGYHNHQNYNS 72


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 226 HHSCRRRLLLRYHDHQRWCS 167
           HH  +++L   YH+HQ + S
Sbjct: 53  HHIQQQQLQYGYHNHQNYNS 72


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 186 TINAGVPQGSVLSP 145
           T + G+PQG VL+P
Sbjct: 442 TYDYGIPQGVVLNP 455


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 186 TINAGVPQGSVLSP 145
           T + G+PQG VL+P
Sbjct: 442 TYDYGIPQGVVLNP 455


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,190
Number of Sequences: 336
Number of extensions: 3872
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18322480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)