Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0467
(696 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac... 27 2.6
SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr 1|||... 27 2.6
SPAPB17E12.10c |||SAM-dependent methyltransferase|Schizosaccharo... 27 3.4
SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 compon... 26 4.5
SPBC902.05c |idh2|glu2|isocitrate dehydrogenase |Schizosaccharom... 26 5.9
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti... 25 7.8
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc... 25 7.8
SPBC1604.20c |tea2|klp4|kinesin-like protein Tea2|Schizosaccharo... 25 7.8
SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces po... 25 7.8
SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB... 25 7.8
>SPAC1751.01c |gti1||gluconate transporter inducer
Gti1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 27.1 bits (57), Expect = 2.6
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = +2
Query: 152 STEPCGTPALMVMVSEQQPSTTTVMLRPSKKLAIPCRVPQGSR 280
S++P GTP + PSTT V + I R PQ R
Sbjct: 200 SSKPTGTPFVPKSPPSSSPSTTNVSNASTSSAPINPRAPQTRR 242
>SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 644
Score = 27.1 bits (57), Expect = 2.6
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = -2
Query: 470 RQLISDRQYGF--RHGRSAGDLLVYLTHKWAEALESKGEALAVSLDI 336
RQ R+ GF RH R G + + + + +A + G A AVS DI
Sbjct: 355 RQSRMSRRLGFTLRHMRINGSSVSFYPNPYTDATDIAGNATAVSEDI 401
>SPAPB17E12.10c |||SAM-dependent
methyltransferase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 301
Score = 26.6 bits (56), Expect = 3.4
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 7/55 (12%)
Frame = +2
Query: 251 IPCRVPQGSRM-------LEASLEVPYARPCRRPSRYQGSQREPRPCFPRLQPIY 394
IPCR+P+ S M +E LE+ A R S ++ Q P LQ ++
Sbjct: 109 IPCRLPENSSMIQGNILSMEIQLEIAKAAIRSRNSFFRNQQDHNSASIPYLQSVF 163
>SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 component
of oxoglutarate dehydrogenase complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 26.2 bits (55), Expect = 4.5
Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = -2
Query: 386 AEALESKGEALAVSLDIAKAFDRV-WHRALLXKLPAYGIPEGLCKGSLAFWM 234
A+ L S +V+ ++K+ V W R ++ PE + +G+LA W+
Sbjct: 12 AKCLLSLRSGYSVTAPVSKSMANVLWARYASTRIKTPPFPESITEGTLAQWL 63
>SPBC902.05c |idh2|glu2|isocitrate dehydrogenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 378
Score = 25.8 bits (54), Expect = 5.9
Identities = 10/39 (25%), Positives = 18/39 (46%)
Frame = -3
Query: 670 PRLTRLYRLSYNTNRVPSSWKTAHVHPIPKKGDRSDPSN 554
P + + + +VP W+ V+PI K G + P +
Sbjct: 58 PEIAQSVERIFKAAKVPIEWERVKVYPILKNGTTTIPDD 96
>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1086
Score = 25.4 bits (53), Expect = 7.8
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +2
Query: 296 LEVPYARPCRRPSRYQGSQREPRPCFPRLQPIYV*GIQEDRQL 424
LEV +AR + R QGS + C R PI+ I E ++L
Sbjct: 1029 LEVRFARLWTQCQRCQGSMHQDVICTSRDCPIFYMRIAEHKKL 1071
>SPBC685.09 |orc2|orp2|origin recognition complex subunit
Orc2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 25.4 bits (53), Expect = 7.8
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = -3
Query: 664 LTRLYRLSYNTNRVPSSWKTA-HVHPIPKKGDRSDPSNYRPIAIT 533
LTR+ L + + + K +V PKKG DPS P +T
Sbjct: 18 LTRVAHLVFANSHESNDLKMVENVSSTPKKGVLEDPSTLTPEVVT 62
>SPBC1604.20c |tea2|klp4|kinesin-like protein
Tea2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 628
Score = 25.4 bits (53), Expect = 7.8
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +1
Query: 286 GSFXRSALCQTLSKAFAISRLTARASPLLSKASAHLCVRYTR 411
G+F +L L+ ISRL+A A+P L+ S H+ R ++
Sbjct: 378 GAFINKSL---LTLGTVISRLSAAANPSLTSNSGHIPYRESK 416
>SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 348
Score = 25.4 bits (53), Expect = 7.8
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Frame = -2
Query: 467 QLISDRQYGFRHGR----SAGDLLVYLTHKWAEALESKG 363
QL D +Y +R G S DL+ YLT +W E G
Sbjct: 35 QLNEDGEYIYRTGDLVLGSVDDLISYLTPRWRERFVING 73
>SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 588
Score = 25.4 bits (53), Expect = 7.8
Identities = 11/55 (20%), Positives = 27/55 (49%)
Frame = -1
Query: 198 SDTMTINAGVPQGSVLSPTLFILHINDMLSIDGMHCYADDSTGDARYIGHQSLSR 34
S +T+ + VP+ S FI + + +LSI + C+ ++ ++++ +
Sbjct: 39 SSRLTVRSAVPEKSAFGSIEFIFYFSVILSILTIACFKIHYVSSPKHPNYKNIEK 93
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,984,289
Number of Sequences: 5004
Number of extensions: 63699
Number of successful extensions: 206
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -