Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0467
(696 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_02_0297 - 13891954-13892556,13893019-13893855,13894179-138943... 44 1e-04
07_03_1291 + 25545749-25546262,25546989-25547669,25547693-255477... 39 0.004
07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,177... 39 0.004
04_03_0582 + 17528335-17529790,17529913-17531651,17531814-175320... 30 2.0
09_04_0512 + 18226981-18227143,18227648-18229555,18229649-182302... 29 3.5
07_01_0276 + 2028983-2029070,2030084-2030151,2030317-2031246,203... 28 8.1
02_05_0337 - 28060009-28060716,28061055-28061498,28061732-280617... 28 8.1
>06_02_0297 -
13891954-13892556,13893019-13893855,13894179-13894394,
13895455-13895874,13896198-13896506
Length = 794
Score = 44.0 bits (99), Expect = 1e-04
Identities = 22/66 (33%), Positives = 34/66 (51%)
Frame = -2
Query: 467 QLISDRQYGFRHGRSAGDLLVYLTHKWAEALESKGEALAVSLDIAKAFDRVWHRALLXKL 288
+L+SD YGF G++ D + + +SK E + + LD KAFD + H A+L +
Sbjct: 415 KLVSDNHYGFIKGKTIQDCPAWPFEYIHQCQQSKREIVLLKLDFEKAFDTIEHSAILSVM 474
Query: 287 PAYGIP 270
G P
Sbjct: 475 QHMGFP 480
>07_03_1291 +
25545749-25546262,25546989-25547669,25547693-25547751,
25549152-25549242,25549330-25549743,25550191-25550243,
25550947-25551177,25551492-25551708,25551790-25551890,
25552446-25552532,25553536-25553676,25553839-25553961,
25554070-25554522,25554931-25555308,25555410-25556060,
25556264-25556368,25556482-25556707,25557204-25557241
Length = 1520
Score = 38.7 bits (86), Expect = 0.004
Identities = 22/61 (36%), Positives = 29/61 (47%)
Frame = -2
Query: 449 QYGFRHGRSAGDLLVYLTHKWAEALESKGEALAVSLDIAKAFDRVWHRALLXKLPAYGIP 270
Q GF GR + L+Y T K + L + LD AKAFD V ++L L G P
Sbjct: 6 QTGFLKGRCISENLIYATELIQACHARKCQTLIIKLDFAKAFDSVNWQSLFQILSVKGFP 65
Query: 269 E 267
+
Sbjct: 66 D 66
>07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,
1778770-1778900,1779530-1779788,1779823-1780098,
1780100-1781352
Length = 1344
Score = 38.7 bits (86), Expect = 0.004
Identities = 22/61 (36%), Positives = 27/61 (44%)
Frame = -2
Query: 449 QYGFRHGRSAGDLLVYLTHKWAEALESKGEALAVSLDIAKAFDRVWHRALLXKLPAYGIP 270
Q GF GR + L+Y T K + + V LD KAFD V +L L G P
Sbjct: 1021 QTGFLKGRCISENLIYATELIQACYRRKCQTIIVKLDFTKAFDSVIWSSLFKILAVRGFP 1080
Query: 269 E 267
E
Sbjct: 1081 E 1081
>04_03_0582 + 17528335-17529790,17529913-17531651,17531814-17532035,
17532062-17533525
Length = 1626
Score = 29.9 bits (64), Expect = 2.0
Identities = 31/102 (30%), Positives = 47/102 (46%), Gaps = 6/102 (5%)
Frame = -2
Query: 563 PLELQTYRDNFLA---FQGDGGIINIQLLKYLEDRQLISDRQYGFRHGRSAGD--LLVY- 402
P++L+ YR L ++ + +L L+D L+S Q F GR D LL +
Sbjct: 961 PIDLKDYRPISLCNVVYKVVSKCLVNRLRPILDD--LVSKEQSAFIQGRMITDNALLAFE 1018
Query: 401 LTHKWAEALESKGEALAVSLDIAKAFDRVWHRALLXKLPAYG 276
H + ++ A A LD++KA+DRV R L L G
Sbjct: 1019 CFHSIQKNKKANSAACAYKLDLSKAYDRVDWRFLELALNKLG 1060
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/55 (25%), Positives = 27/55 (49%)
Frame = -3
Query: 640 YNTNRVPSSWKTAHVHPIPKKGDRSDPSNYRPIAITSLLSKVMEES*TSNFLSIL 476
+ + +P + IPKK D +YRPI++ +++ KV+ + + IL
Sbjct: 938 FQSGLMPEGVNDTAIVLIPKKDQPIDLKDYRPISLCNVVYKVVSKCLVNRLRPIL 992
>09_04_0512 +
18226981-18227143,18227648-18229555,18229649-18230295,
18230710-18231949,18232085-18232419,18232500-18232577,
18232872-18232978,18233020-18233062
Length = 1506
Score = 29.1 bits (62), Expect = 3.5
Identities = 31/124 (25%), Positives = 48/124 (38%), Gaps = 3/124 (2%)
Frame = +2
Query: 5 SFNRLSCTTLRERL*WPIYRASPVLSSA*QCMPSIDSMSLICSMKS---VGESTEPCGTP 175
S N+ C T+ + P Y + P++ C P I+S+ CS S E T+ C
Sbjct: 384 SRNKDPCPTISSEV--PNYTSEPLVEQDTYCNPEINSLEGPCSKVSQLLEKEETKACPDA 441
Query: 176 ALMVMVSEQQPSTTTVMLRPSKKLAIPCRVPQGSRMLEASLEVPYARPCRRPSRYQGSQR 355
++ +T +R LA + S LE P+ PC+R Q +
Sbjct: 442 NPLLKTDALHTIGSTERIR---NLA-----SRNSTPLEQRSSDPHVLPCQRSRSVQPADS 493
Query: 356 EPRP 367
RP
Sbjct: 494 SSRP 497
>07_01_0276 +
2028983-2029070,2030084-2030151,2030317-2031246,
2031334-2031415,2031544-2031609,2032606-2033304,
2033422-2035424,2035599-2036173,2037060-2037223,
2037306-2037365,2037475-2037839
Length = 1699
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +3
Query: 450 PVTDQLAILKILKKLDVYDSSITLESKE 533
P TD+ AILK + K D+ +S + SK+
Sbjct: 357 PTTDEAAILKAIDKGDIINSGVHQASKD 384
>02_05_0337 -
28060009-28060716,28061055-28061498,28061732-28061793,
28061896-28062007,28062144-28062263
Length = 481
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = +1
Query: 178 VDGHGIGAAAVD--DNCDAPSIQKASDPLQSPS 270
VDG G A++VD D C +PSI A +Q+P+
Sbjct: 212 VDGGGSPASSVDREDGCLSPSIPTAELAMQAPN 244
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,314,022
Number of Sequences: 37544
Number of extensions: 505692
Number of successful extensions: 1494
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1494
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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