Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0467
         (696 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical ...    50   2e-06
AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ...    45   6e-05
U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical pr...    44   8e-05
U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical pr...    42   3e-04
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans...    42   3e-04
AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical ...    42   3e-04
AF036692-9|AAB88330.1|  389|Caenorhabditis elegans Hypothetical ...    36   0.037
AC090999-1|AAK26146.1|  390|Caenorhabditis elegans Hypothetical ...    31   1.0  
Z81118-3|CAB03325.1|  346|Caenorhabditis elegans Hypothetical pr...    29   4.2  
Z93377-1|CAB07573.1|  340|Caenorhabditis elegans Hypothetical pr...    28   7.3  
AC024778-2|AAF60566.2| 2325|Caenorhabditis elegans Neuronal igca...    28   7.3  
Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical pr...    27   9.7  
Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical pr...    27   9.7  
Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical p...    27   9.7  
Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical p...    27   9.7  
AL021497-20|CAA16410.3| 1057|Caenorhabditis elegans Hypothetical...    27   9.7  
AL021497-19|CAA16406.2|  989|Caenorhabditis elegans Hypothetical...    27   9.7  
AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane...    27   9.7  

>AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical
           protein R11E3.3 protein.
          Length = 931

 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 24/55 (43%), Positives = 38/55 (69%), Gaps = 1/55 (1%)
 Frame = -3

Query: 664 LTRLYRLSYNTNRVPSSWKTAHVHPIPK-KGDRSDPSNYRPIAITSLLSKVMEES 503
           L  LY +S +TN +P  WK A+V  IPK K D +  S+YRPI++ S ++K++E++
Sbjct: 367 LAYLYNVSLSTNIIPDKWKKANVIMIPKPKKDPAIASSYRPISLLSPIAKLLEKA 421



 Score = 39.9 bits (89), Expect = 0.002
 Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
 Frame = -1

Query: 252 IASFLDGRSITVVVDGCCSDTMTINAGVPQGSVLSPTLFILHINDMLSIDG--MHCYADD 79
           + ++L  R I    D   S   T+  GVPQGSV+SP LF  ++ DM +     +  YADD
Sbjct: 506 LGNYLHKRLIRTSHDNHWSKWHTLLGGVPQGSVISPNLFTFYLKDMPTQQDTMLISYADD 565

Query: 78  STGDAR 61
            +  AR
Sbjct: 566 MSIIAR 571


>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
            protein F21E9.1 protein.
          Length = 1170

 Score = 44.8 bits (101), Expect = 6e-05
 Identities = 27/61 (44%), Positives = 40/61 (65%), Gaps = 6/61 (9%)
 Frame = -1

Query: 243  FLDGRSITVVVDGCCS-DTMTINAGVPQGSVLSPTLFILHINDMLSID-----GMHCYAD 82
            FL+ R+ +V ++   S ++  I++GVPQGSV  P LFIL IN++L ID      + C+AD
Sbjct: 856  FLENRTFSVKINKFVSKNSYPISSGVPQGSVSGPLLFILFINNLL-IDLAPTINISCFAD 914

Query: 81   D 79
            D
Sbjct: 915  D 915



 Score = 35.1 bits (77), Expect = 0.048
 Identities = 13/30 (43%), Positives = 21/30 (70%)
 Frame = -3

Query: 664 LTRLYRLSYNTNRVPSSWKTAHVHPIPKKG 575
           L+ +Y+ S+  +++P  WK A + PIPKKG
Sbjct: 809 LSIIYKQSFADSKIPDCWKKAIIIPIPKKG 838


>U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical
           protein F31A9.6 protein.
          Length = 358

 Score = 44.4 bits (100), Expect = 8e-05
 Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
 Frame = -1

Query: 285 SIRDP*GTLQGIASFLDGRSITVVVDGCCSDTMTINAGVPQGSVLSPTLFILHINDMLSI 106
           S+R     L  +  FL  RS  V +    S       GVPQG+VLSP LF +++ND+ SI
Sbjct: 39  SLRKNKNLLIWVNEFLSNRSFRVRIGQTLSSRKFATCGVPQGAVLSPLLFGIYVNDISSI 98

Query: 105 --DGMHC--YADDS 76
             + + C  +ADD+
Sbjct: 99  LPEKVACKQFADDT 112



 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -2

Query: 389 WAEALESKGEALAVSLDIAKAFDRVWHRALLXKL 288
           W ++++   +   + LD +KAFDR+ H  LL KL
Sbjct: 4   WTKSIDHGEQIDIIYLDFSKAFDRLPHDLLLDKL 37


>U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical
           protein F20B4.7 protein.
          Length = 891

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 20/50 (40%), Positives = 28/50 (56%)
 Frame = -3

Query: 664 LTRLYRLSYNTNRVPSSWKTAHVHPIPKKGDRSDPSNYRPIAITSLLSKV 515
           +T  +    ++  VP  WKT+    I KKGDR +  NYRPI +  +L KV
Sbjct: 415 ITDRFNRYLHSRNVPKPWKTSKTTLIFKKGDRENLENYRPICLLPVLYKV 464


>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
           transcriptase protein.
          Length = 1066

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 20/50 (40%), Positives = 28/50 (56%)
 Frame = -3

Query: 664 LTRLYRLSYNTNRVPSSWKTAHVHPIPKKGDRSDPSNYRPIAITSLLSKV 515
           +T  +    ++  VP  WKT+    I KKGDR +  NYRPI +  +L KV
Sbjct: 586 ITDRFNRYLHSRNVPKPWKTSKTTLIFKKGDRENLENYRPICLLPVLYKV 635


>AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical
           protein K10F12.5 protein.
          Length = 805

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 20/50 (40%), Positives = 28/50 (56%)
 Frame = -3

Query: 664 LTRLYRLSYNTNRVPSSWKTAHVHPIPKKGDRSDPSNYRPIAITSLLSKV 515
           +T  +    ++  VP  WKT+    I KKGDR +  NYRPI +  +L KV
Sbjct: 325 ITDRFNRYLHSRNVPKPWKTSKTTLIFKKGDRENLENYRPICLLPVLYKV 374


>AF036692-9|AAB88330.1|  389|Caenorhabditis elegans Hypothetical
           protein C44B12.7 protein.
          Length = 389

 Score = 35.5 bits (78), Expect = 0.037
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
 Frame = -1

Query: 243 FLDGRSITVVVDGCCSDTM-TINAGVPQGSVLSPTLFILHINDML 112
           FL  R+ +V V+      +  I++GVP+GSV  P LF++ IN +L
Sbjct: 32  FLSSRTFSVKVNNHIDPNIHPISSGVPKGSVSGPFLFLIFINSLL 76


>AC090999-1|AAK26146.1|  390|Caenorhabditis elegans Hypothetical
           protein Y82E9BR.8 protein.
          Length = 390

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +2

Query: 116 MSLICSMKSVGESTEPCGTPALMVMVSEQ 202
           +SL    KS GE T+PCGTP    + SE+
Sbjct: 50  ISLTNMPKSTGERTDPCGTPHTAFLGSEK 78


>Z81118-3|CAB03325.1|  346|Caenorhabditis elegans Hypothetical
           protein T10G3.2 protein.
          Length = 346

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 16/57 (28%), Positives = 28/57 (49%)
 Frame = +2

Query: 8   FNRLSCTTLRERL*WPIYRASPVLSSA*QCMPSIDSMSLICSMKSVGESTEPCGTPA 178
           F+++ C +LR R   P+ R+ P+  S      S+ ++  +  M   GE+  P G  A
Sbjct: 283 FSQMCCNSLRRR---PVRRSHPISPSPGTSPSSVVTIQNVFGMTLSGEANGPAGQEA 336


>Z93377-1|CAB07573.1|  340|Caenorhabditis elegans Hypothetical
           protein F13A7.1 protein.
          Length = 340

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +1

Query: 190 GIGAAAVDDNCDAPSIQKASDPLQSPSGIPYAGSF 294
           G  A+       AP+ Q+A  P+QS  G  Y G++
Sbjct: 297 GSAASRAQSPAPAPAAQQARQPVQSEMGCLYGGAY 331


>AC024778-2|AAF60566.2| 2325|Caenorhabditis elegans Neuronal igcam
            protein 4 protein.
          Length = 2325

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = -2

Query: 476  EDRQLISDRQYGFRHGRSAGDLLVYLTHKWAEALESKGEALAVSLDIAKAFD 321
            ED+Q  S R Y   HG + G  + Y    WAE    KGE  + ++ I  + D
Sbjct: 1823 EDQQRTS-RNYFDTHGLAEG--VTYFFSVWAETSAGKGEQRSANVTIGPSKD 1871


>Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical protein
            K08E5.3b protein.
          Length = 3183

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +3

Query: 75   CYHPHSNACHQ*TAC 119
            C +PH N CHQ  AC
Sbjct: 1582 CQYPHLNDCHQNAAC 1596


>Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical protein
            K08E5.3a protein.
          Length = 3767

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +3

Query: 75   CYHPHSNACHQ*TAC 119
            C +PH N CHQ  AC
Sbjct: 2166 CQYPHLNDCHQNAAC 2180


>Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical
            protein K08E5.3b protein.
          Length = 3183

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +3

Query: 75   CYHPHSNACHQ*TAC 119
            C +PH N CHQ  AC
Sbjct: 1582 CQYPHLNDCHQNAAC 1596


>Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical
            protein K08E5.3a protein.
          Length = 3767

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +3

Query: 75   CYHPHSNACHQ*TAC 119
            C +PH N CHQ  AC
Sbjct: 2166 CQYPHLNDCHQNAAC 2180


>AL021497-20|CAA16410.3| 1057|Caenorhabditis elegans Hypothetical
           protein Y51A2D.7b protein.
          Length = 1057

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +3

Query: 390 FMCEVYKKIAS*ATMTETVLPVTDQLAILKILKKLDVYDSSITLES 527
           ++CE+  +++S       +LP      IL+I K  DV D  ++L S
Sbjct: 140 WLCEICSELSSKNAGRPAMLPAQQNAEILQIWKSNDVIDKLLSLLS 185


>AL021497-19|CAA16406.2|  989|Caenorhabditis elegans Hypothetical
           protein Y51A2D.7a protein.
          Length = 989

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +3

Query: 390 FMCEVYKKIAS*ATMTETVLPVTDQLAILKILKKLDVYDSSITLES 527
           ++CE+  +++S       +LP      IL+I K  DV D  ++L S
Sbjct: 140 WLCEICSELSSKNAGRPAMLPAQQNAEILQIWKSNDVIDKLLSLLS 185


>AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane cell
            adhesion receptorMUA-3 precursor protein.
          Length = 3767

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +3

Query: 75   CYHPHSNACHQ*TAC 119
            C +PH N CHQ  AC
Sbjct: 2166 CQYPHLNDCHQNAAC 2180


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,838,395
Number of Sequences: 27780
Number of extensions: 379026
Number of successful extensions: 974
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 973
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)