Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0467
         (696 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g20520.1 68417.m02991 hypothetical protein                          29   2.2  
At4g24570.1 68417.m03521 mitochondrial substrate carrier family ...    29   3.9  
At3g59680.1 68416.m06658 expressed protein                             28   6.8  
At1g28110.2 68414.m03444 serine carboxypeptidase S10 family prot...    27   9.0  
At1g28110.1 68414.m03443 serine carboxypeptidase S10 family prot...    27   9.0  

>At4g20520.1 68417.m02991 hypothetical protein
          Length = 376

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
 Frame = -2

Query: 464 LISDRQYGFRHGRSAGDLLVYLTHKWAEALESKGEA--LAVSLDIAKAFDRVWHRALLXK 291
           LI   Q  F  GR + D +V++          KG    + + LD+ KA+DR+    L   
Sbjct: 12  LIGPAQASFIPGRVSTDNIVFVQEAVHSMRRKKGVKGWMLLKLDLEKAYDRIRWDYLEDT 71

Query: 290 LPAYGIPE 267
           L + G PE
Sbjct: 72  LISAGFPE 79


>At4g24570.1 68417.m03521 mitochondrial substrate carrier family
           protein contains Pfam profile: PF00153 mitochondrial
           carrier protein
          Length = 313

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = +2

Query: 146 GESTEPCGTPALMVMVSEQQPSTTTV-MLRPSKKLAIPCRVPQGSRMLEASLEVPYARP 319
           G ST P     + + +  + PSTTTV +LRP+  LA P   P  +  LE +  VP   P
Sbjct: 17  GCSTHPLDLIKVRLQLHGEAPSTTTVTLLRPA--LAFPNSSP--AAFLETTSSVPKVGP 71


>At3g59680.1 68416.m06658 expressed protein 
          Length = 229

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = -3

Query: 679 KLTPRLTRLYRLSYNTNRVPSSWKTAHVHPIPKKGDRSDPSNYRPIAITSLLSK 518
           K +P     Y+ +    R  ++W+T     IPK   +  P N+RP    S+ SK
Sbjct: 36  KASPARKPWYQRAMAVARFATNWRT-----IPKSSSQQQPENFRPSRNPSVNSK 84


>At1g28110.2 68414.m03444 serine carboxypeptidase S10 family protein
           similar to H.vulgare gene encoding serine
           carboxypeptidase II, CP-MII GI:1731989
          Length = 461

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 95  CMPSIDSMSLICSMKSVGESTEPC 166
           C+PS+ S S + S   VGES + C
Sbjct: 286 CIPSVLSQSKVVSPNQVGESVDVC 309


>At1g28110.1 68414.m03443 serine carboxypeptidase S10 family protein
           similar to H.vulgare gene encoding serine
           carboxypeptidase II, CP-MII GI:1731989
          Length = 461

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 95  CMPSIDSMSLICSMKSVGESTEPC 166
           C+PS+ S S + S   VGES + C
Sbjct: 286 CIPSVLSQSKVVSPNQVGESVDVC 309


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,239,676
Number of Sequences: 28952
Number of extensions: 363134
Number of successful extensions: 1028
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 997
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1028
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)