Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0466
         (699 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC285.17 |spp27|uaf30|RNA polymerase I upstream activation fac...    29   0.64 
SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce...    28   1.1  
SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    28   1.1  
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c...    28   1.5  
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb...    27   3.4  
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb...    26   4.5  
SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|c...    26   4.5  
SPAC1D4.07c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        26   6.0  
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    26   6.0  
SPAC31G5.18c |||ubiquitin family, human C1ORF55 related|Schizosa...    25   7.9  

>SPCC285.17 |spp27|uaf30|RNA polymerase I upstream activation factor
           complex subunit Spp27|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 233

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = +3

Query: 279 VKKVLSHQVKNLMKRNLPKTTMKKKKVLNPNQLKNHTKKNIVRKPTMKS 425
           + K L++ +  +    LPK   K ++   PN L    +K +V  PT +S
Sbjct: 183 MNKYLTNLMTKIPDDQLPKPQPKNEEPAAPNDLPKQEEKELVEPPTAES 231


>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1004

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = +3

Query: 213 ETKTEHSESHHAPI*KSIMKRKVKKVLSHQVKNLMKRNLPKTTMKKKKVLNP-NQLKNHT 389
           E +   S   +AP+     KR+++ V S   K L++R   K T K+K V  P  Q     
Sbjct: 55  EDEGSSSIDENAPLISIKRKRRIRTVKSTSNKELVQRKASKPT-KQKSVFTPLEQQYLEL 113

Query: 390 KKN 398
           KKN
Sbjct: 114 KKN 116


>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = -2

Query: 365 IQNFLFLHGCFR*VSLHEILHLMTQNFLHFSFHDALLDWGMMTLTVF-CFGFYL 207
           I  FL  H      SL  I HL++ +FL FSF    L + +++  +F CF  +L
Sbjct: 155 INFFLLYHQIILSHSLFHISHLISFHFLFFSF----LSFPLLSFILFPCFSLFL 204


>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 807

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 13/24 (54%), Positives = 18/24 (75%), Gaps = 3/24 (12%)
 Frame = +3

Query: 189 VKNEQLKVET---KTEHSESHHAP 251
           VK+E L+ ET   KTEH++S+H P
Sbjct: 129 VKDEGLRTETIVKKTEHADSNHQP 152


>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 497

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 16/32 (50%), Positives = 21/32 (65%)
 Frame = +3

Query: 288 VLSHQVKNLMKRNLPKTTMKKKKVLNPNQLKN 383
           VL+  +KN ++ NLPK + KKKKV    Q KN
Sbjct: 70  VLNDFLKNFLELNLPKAS-KKKKVSLGVQDKN 100


>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 929

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 7/60 (11%)
 Frame = +3

Query: 195 NEQLKVETKTEHSESHH-------API*KSIMKRKVKKVLSHQVKNLMKRNLPKTTMKKK 353
           NEQLKV  K   SES         AP+ KSI  R  ++    Q KN +++  P     +K
Sbjct: 301 NEQLKVSLKPLVSESSSISSKKLDAPLAKSIQDRLERQAAYEQTKNDLEKWKPIVADNRK 360


>SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 23/96 (23%), Positives = 38/96 (39%), Gaps = 2/96 (2%)
 Frame = +3

Query: 129 NVEKKIEQHEKSHPDPPCHEVKNEQLKVETKTEHSESHHAPI*KSIMKRKVKKVLS--HQ 302
           N +K I QH+    D   H  +NE  K E K+E  E             KV +  S   +
Sbjct: 187 NSKKTILQHDNKEEDKEIHSEENE-TKDEIKSEKKEPEIKKQEGGSSTEKVGQPSSSDDK 245

Query: 303 VKNLMKRNLPKTTMKKKKVLNPNQLKNHTKKNIVRK 410
            K    ++ P    +K   +   ++K   K +++ K
Sbjct: 246 AKGSTSKDQPSEEEEKTSDIQDRKIKTPIKPSLLGK 281


>SPAC1D4.07c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +3

Query: 117 FLPVNVEKKIEQHEKSHPDPPCHEVKNEQLKVETKTE-HSESH 242
           FL  + E  +      HP PP H   +  +KV  K++ H ++H
Sbjct: 73  FLASSCEITVRLSSGGHPSPPVHIYMSALIKVCKKSKPHLQTH 115


>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +3

Query: 396 NIVRKPTMKSLLKHLTKNTVNP*KNYLLRA 485
           + + KP  KSL++ L ++T+NP +  +L A
Sbjct: 271 DFISKPPTKSLIRLLAEHTLNPVEKSVLLA 300


>SPAC31G5.18c |||ubiquitin family, human C1ORF55
           related|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 348 KKKVLNPNQLKNHTKKNIVRKPTMKSLLKHL 440
           K   LN + LKN    N+ R  T+++LL+H+
Sbjct: 4   KTVFLNGDFLKNSVNVNLNRLATVETLLRHV 34


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,990,851
Number of Sequences: 5004
Number of extensions: 34057
Number of successful extensions: 118
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)