Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0466
(699 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_01_0059 - 940681-940836,941352-941840 32 0.38
09_04_0163 - 15249816-15249920,15250032-15250163,15250463-152506... 29 2.7
02_03_0387 - 18412064-18412144,18412280-18412361,18412922-184131... 29 2.7
09_02_0106 + 4347024-4347536,4349619-4349700,4350499-4350747,435... 29 3.5
07_03_1632 + 28271559-28271645,28272641-28272713,28273030-282733... 29 4.7
06_03_1360 + 29558789-29559020,29559203-29559378,29560285-295603... 29 4.7
01_06_0100 - 26424769-26425545,26425666-26425697,26425778-264258... 29 4.7
09_06_0128 + 21026454-21026909 28 6.2
>09_01_0059 - 940681-940836,941352-941840
Length = 214
Score = 32.3 bits (70), Expect = 0.38
Identities = 32/137 (23%), Positives = 65/137 (47%), Gaps = 2/137 (1%)
Frame = +3
Query: 33 SLIQPDGYIREVKYVADDLTGFNAVVKKFLPVNVEKKIEQHEKSHPDPPCHEVKNE--QL 206
+L++ D I + K D + F ++ +P V + + PPC ++K E +
Sbjct: 76 ALVELDDEI-QAKAALDLMNDFPFIIGG-MPRPVRATCAKPDMFRERPPCPDIKKEFRWV 133
Query: 207 KVETKTEHSESHHAPI*KSIMKRKVKKVLSHQVKNLMKRNLPKTTMKKKKVLNPNQLKNH 386
K E TE+ I + KR+ + ++ +KN ++ + +++++L+ N K
Sbjct: 134 KQEDGTEYEGMKKLRI---LAKRQEAENMA-LIKNQLEEE-KELAKQQQELLDGNYKKYD 188
Query: 387 TKKNIVRKPTMKSLLKH 437
+N+V+ MKSL +H
Sbjct: 189 MLENVVQNGNMKSLAQH 205
>09_04_0163 -
15249816-15249920,15250032-15250163,15250463-15250629,
15251259-15251448,15252530-15252661,15253275-15253382,
15253513-15253608,15253702-15253809,15253917-15254089,
15255026-15255401,15255887-15256030,15256125-15256799,
15256917-15256982,15257082-15257249
Length = 879
Score = 29.5 bits (63), Expect = 2.7
Identities = 19/61 (31%), Positives = 25/61 (40%)
Frame = +3
Query: 63 EVKYVADDLTGFNAVVKKFLPVNVEKKIEQHEKSHPDPPCHEVKNEQLKVETKTEHSESH 242
E Y A+D+TG KF+ VN E+H DP E N K + + H
Sbjct: 589 EGPYDAEDITGHTTDKTKFILVNYSNSSEEHNSQ--DPTQDESDNIPNKSTNQPKFECLH 646
Query: 243 H 245
H
Sbjct: 647 H 647
>02_03_0387 -
18412064-18412144,18412280-18412361,18412922-18413142,
18413387-18413745,18413834-18414443,18414546-18414605,
18414685-18414751,18414843-18414936,18415012-18415125,
18415242-18415308,18415386-18415551,18416587-18417080
Length = 804
Score = 29.5 bits (63), Expect = 2.7
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = +3
Query: 42 QPDGYIREVKYVADDLTGFNAVVKKFLPVNVEKKIEQHEKSHPDPPCHE 188
+ D I DD++G AVVK+ V V K E+ E+ PD HE
Sbjct: 571 EDDDMIMSDTVAKDDMSGL-AVVKEETSVEVPVKNEEEEELKPDEIVHE 618
>09_02_0106 +
4347024-4347536,4349619-4349700,4350499-4350747,
4351594-4351646,4353064-4353159,4353289-4353423
Length = 375
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +3
Query: 63 EVKYVADDLTGFNAVVKKFLPVNVEKKIEQHEKSHP 170
E Y A+D+TG KF+ VN E+H+ P
Sbjct: 318 EGPYDAEDITGHTTDKTKFILVNYSNSSEEHKSQDP 353
>07_03_1632 + 28271559-28271645,28272641-28272713,28273030-28273361,
28273455-28274791,28275451-28275848,28275963-28277644,
28277727-28277884,28278645-28278802,28279110-28279270,
28279826-28280014
Length = 1524
Score = 28.7 bits (61), Expect = 4.7
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Frame = +3
Query: 156 EKSHPDPPCHEVKN---EQLKVETKTEHSESHHAPI*KSIMKRKVKKVLSHQVKNLMKRN 326
EKSHP H+++N + L K ESH AP+ + K L+ Q+K N
Sbjct: 1204 EKSHPKSNKHDMQNSKAQMLPSPLKESKVESHSAPLRSNASK------LTAQLKRGNVEN 1257
Query: 327 LPKTTMKKKKVLNPNQLKNHTKKN 398
+ + K+ + NP + +K+
Sbjct: 1258 GGQHGITKQAISNPADTSSPVRKD 1281
>06_03_1360 +
29558789-29559020,29559203-29559378,29560285-29560346,
29560426-29561212,29561516-29562244
Length = 661
Score = 28.7 bits (61), Expect = 4.7
Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 1/92 (1%)
Frame = +3
Query: 129 NVEKKIEQHEKSHPDPPCHEVKNEQLKVETKTEHSESHHAPI*KSIMKRKVKKVLSHQVK 308
NVEK+ Q + D P EV QL + I +S+ + ++ + V+
Sbjct: 286 NVEKENPQVGNAPVDKPTQEVPQNQLPTQIPQSVQNQLPTQIPQSV-QNQLPAQIPQSVQ 344
Query: 309 NLMKRNLPKTTMKKKKVLNPNQLKN-HTKKNI 401
N + +P++ + NP + T +N+
Sbjct: 345 NQLPTQIPQSVQNRLSTQNPQSTQTLQTTQNL 376
>01_06_0100 -
26424769-26425545,26425666-26425697,26425778-26425894,
26426067-26426118,26426229-26426281,26426883-26427585
Length = 577
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/48 (29%), Positives = 28/48 (58%)
Frame = +3
Query: 279 VKKVLSHQVKNLMKRNLPKTTMKKKKVLNPNQLKNHTKKNIVRKPTMK 422
+KK ++ + M+R + K TM K+++ +K T+K +++ TMK
Sbjct: 376 MKKKMTMKRMMTMRRKM-KRTMMKRRMRKRTTMKRRTRKRTMKRRTMK 422
>09_06_0128 + 21026454-21026909
Length = 151
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +3
Query: 270 KRKVKKVLSHQVKNLMKRNLPKTTMKKKKVLNPNQLKNHTK 392
+RK+K ++ ++K + K+ PK MKK K Q K TK
Sbjct: 3 RRKMKAMVKRKMKAMGKKK-PKVPMKKTKAQRKKQPKASTK 42
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,570,093
Number of Sequences: 37544
Number of extensions: 206305
Number of successful extensions: 708
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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