Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0466
(699 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_53468| Best HMM Match : E-MAP-115 (HMM E-Value=4.2) 42 5e-04
SB_27115| Best HMM Match : SAM_1 (HMM E-Value=1.7e-08) 36 0.024
SB_56158| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.055
SB_10587| Best HMM Match : DGCR6 (HMM E-Value=8.6e-07) 33 0.29
SB_17447| Best HMM Match : zf-B_box (HMM E-Value=0.04) 32 0.39
SB_32268| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_25826| Best HMM Match : Ank (HMM E-Value=6.7e-37) 30 1.6
SB_47440| Best HMM Match : SURF6 (HMM E-Value=0.96) 30 2.1
SB_11195| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_13243| Best HMM Match : COX17 (HMM E-Value=1.7) 29 2.7
SB_48833| Best HMM Match : MgtE_N (HMM E-Value=0.34) 29 2.7
SB_37866| Best HMM Match : CDC37 (HMM E-Value=0.81) 29 3.6
SB_23951| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_6818| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_56928| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_44267| Best HMM Match : DUF602 (HMM E-Value=1.1e-29) 28 6.3
SB_11642| Best HMM Match : LIM (HMM E-Value=1.4) 28 8.4
SB_5549| Best HMM Match : PT (HMM E-Value=1.9) 28 8.4
>SB_53468| Best HMM Match : E-MAP-115 (HMM E-Value=4.2)
Length = 583
Score = 41.9 bits (94), Expect = 5e-04
Identities = 27/108 (25%), Positives = 50/108 (46%), Gaps = 1/108 (0%)
Frame = +3
Query: 138 KKIEQHEKSHPDPPCHEVKNEQLKVETKTEHSESHHA-PI*KSIMKRKVKKVLSHQVKNL 314
K+ Q ++SH P E +E+ E +T SH + K MK+K K+ + +
Sbjct: 463 KERSQEKRSHEKRPHEERSHEERSEEERTHEERSHRKYHMRKDHMKKKHKRKDQKRKYHK 522
Query: 315 MKRNLPKTTMKKKKVLNPNQLKNHTKKNIVRKPTMKSLLKHLTKNTVN 458
K ++ K M+K + + K+H K+ +K M + +T + +N
Sbjct: 523 RKDHMGKDHMRKDQKRKNHMRKDHMNKDNTKKDYMDRYIPQITSHKLN 570
Score = 33.1 bits (72), Expect = 0.22
Identities = 24/105 (22%), Positives = 49/105 (46%), Gaps = 3/105 (2%)
Frame = +3
Query: 153 HEKSHPDPPCHEVKNEQLKVETKTEHSESHHAPI*KSIMKRKVKKVLSHQVKNLMKRNLP 332
HEK + H+ ++++ + K H E H + + ++ +H+ ++ K ++
Sbjct: 452 HEKRPHEERSHKERSQEKRSHEKRPHEERSH--------EERSEEERTHEERSHRKYHMR 503
Query: 333 KTTMKKKKVLNPNQLKNHTKKNIVRKPTMKSLLK---HLTKNTVN 458
K MKKK + K H +K+ + K M+ K H+ K+ +N
Sbjct: 504 KDHMKKKHKRKDQKRKYHKRKDHMGKDHMRKDQKRKNHMRKDHMN 548
>SB_27115| Best HMM Match : SAM_1 (HMM E-Value=1.7e-08)
Length = 527
Score = 36.3 bits (80), Expect = 0.024
Identities = 31/102 (30%), Positives = 47/102 (46%), Gaps = 2/102 (1%)
Frame = +3
Query: 159 KSHPDPPCHEVKNEQLKVETKTEHSESHHAPI*KSIMKRKVK-KVLSH-QVKNLMKRNLP 332
K++P+P HE E++ E SE H P+ K K K + K L H +++ K
Sbjct: 27 KTNPEPETHEAIYEEIWKEI----SEEHPPPLPKRGPKLKQRSKTLDHIEIQQGFKTFTI 82
Query: 333 KTTMKKKKVLNPNQLKNHTKKNIVRKPTMKSLLKHLTKNTVN 458
+ T+K L P QL TK R T+ S+ + + VN
Sbjct: 83 EDTIKPSS-LKPPQLPERTKLRKPRSKTLDSIPVYTNSSMVN 123
>SB_56158| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 212
Score = 35.1 bits (77), Expect = 0.055
Identities = 18/68 (26%), Positives = 37/68 (54%)
Frame = +3
Query: 258 KSIMKRKVKKVLSHQVKNLMKRNLPKTTMKKKKVLNPNQLKNHTKKNIVRKPTMKSLLKH 437
+S +R+ + + Q +N + +NL + +K+ NP+ ++ +N+ RKP +S LK
Sbjct: 120 RSRQRRRHQSLPRKQQRNPLPKNLLPKNLLPRKLQNPSLQRSQPPRNLRRKPPPRSPLKR 179
Query: 438 LTKNTVNP 461
++ V P
Sbjct: 180 PPRSKVLP 187
>SB_10587| Best HMM Match : DGCR6 (HMM E-Value=8.6e-07)
Length = 423
Score = 32.7 bits (71), Expect = 0.29
Identities = 29/123 (23%), Positives = 56/123 (45%)
Frame = +3
Query: 135 EKKIEQHEKSHPDPPCHEVKNEQLKVETKTEHSESHHAPI*KSIMKRKVKKVLSHQVKNL 314
+++IE+++ P E NE+ K E + HH PI + + +++ +Q +
Sbjct: 195 KEEIEKNQHRPHHIPIVEKTNEEDKEEIEKNQHRPHHIPIVEKTNEEDKEEIEKNQHRPH 254
Query: 315 MKRNLPKTTMKKKKVLNPNQLKNHTKKNIVRKPTMKSLLKHLTKNTVNP*KNYLLRATNH 494
+ KT + K+ + NQ + H IV+K T + + + KN P ++ TN
Sbjct: 255 HIPIVEKTNEEDKEEIEKNQHRPH-HIPIVQK-TNEEDKEEIEKNQHRPHHIPIVEKTNE 312
Query: 495 QAK 503
+ K
Sbjct: 313 EDK 315
Score = 32.3 bits (70), Expect = 0.39
Identities = 32/129 (24%), Positives = 57/129 (44%), Gaps = 3/129 (2%)
Frame = +3
Query: 126 VNVEKKIEQHEKSHPDP---PCHEVKNEQLKVETKTEHSESHHAPI*KSIMKRKVKKVLS 296
V +K E+ EK+ P P + NE+ K E + HH PI + + +++
Sbjct: 165 VQYKKHKEEIEKNQHRPHHIPIVQKTNEEDKEEIEKNQHRPHHIPIVEKTNEEDKEEIEK 224
Query: 297 HQVKNLMKRNLPKTTMKKKKVLNPNQLKNHTKKNIVRKPTMKSLLKHLTKNTVNP*KNYL 476
+Q + + KT + K+ + NQ + H IV K T + + + KN P +
Sbjct: 225 NQHRPHHIPIVEKTNEEDKEEIEKNQHRPH-HIPIVEK-TNEEDKEEIEKNQHRPHHIPI 282
Query: 477 LRATNHQAK 503
++ TN + K
Sbjct: 283 VQKTNEEDK 291
>SB_17447| Best HMM Match : zf-B_box (HMM E-Value=0.04)
Length = 1223
Score = 32.3 bits (70), Expect = 0.39
Identities = 29/111 (26%), Positives = 51/111 (45%), Gaps = 2/111 (1%)
Frame = +3
Query: 108 VKKFLPVNVEKKIEQHEKS--HPDPPCHEVKNEQLKVETKTEHSESHHAPI*KSIMKRKV 281
+K+ P+ VEK++++H K + C +K L V K + I + KV
Sbjct: 53 LKEVWPL-VEKELKEHAKRILEDEVACDIIKIASL-VRNKERFVKRRQRLIGPNCATLKV 110
Query: 282 KKVLSHQVKNLMKRNLPKTTMKKKKVLNPNQLKNHTKKNIVRKPTMKSLLK 434
+KV+ +KN+ KT M K+++ LKN + + K K++ K
Sbjct: 111 RKVVEETMKNVHPIYNIKTLMIKRELAKDPDLKNESWDRFLPKFRKKAVKK 161
>SB_32268| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 145
Score = 30.3 bits (65), Expect = 1.6
Identities = 20/87 (22%), Positives = 38/87 (43%), Gaps = 3/87 (3%)
Frame = +3
Query: 147 EQHEKSHPDPPCHEVKNEQLKVETKTEHSESHHAPI*KSI---MKRKVKKVLSHQVKNLM 317
E +K + + E + E K+++ ++ + K+ MKRK K + + KN+
Sbjct: 28 EYEDKKYEEEKYKEEEYEDKDWNMKSKNMKTKNIKTKKNTTKNMKRKNMKTKNMETKNVK 87
Query: 318 KRNLPKTTMKKKKVLNPNQLKNHTKKN 398
+N+ MK K + N + K N
Sbjct: 88 TKNMKTKDMKTKNIKTKNNTTKNMKTN 114
>SB_25826| Best HMM Match : Ank (HMM E-Value=6.7e-37)
Length = 1041
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = -2
Query: 422 LHGGLPHYVFLRVILQLIRIQNFLFLHGCFR*VSLHEI 309
LHGG H+V L V+ + R +L +G + +++ E+
Sbjct: 515 LHGGCEHFVLLSVVYSIARTSPYLNANGVAKGITIPEL 552
>SB_47440| Best HMM Match : SURF6 (HMM E-Value=0.96)
Length = 279
Score = 29.9 bits (64), Expect = 2.1
Identities = 20/84 (23%), Positives = 41/84 (48%)
Frame = +3
Query: 204 LKVETKTEHSESHHAPI*KSIMKRKVKKVLSHQVKNLMKRNLPKTTMKKKKVLNPNQLKN 383
L+ +++ E+S I ++ +R + +V + +K LP+T KK +VL
Sbjct: 27 LREKSRKENSSGQEKEILQNTGERFKNRTSKKRVTDKVKDKLPQTPEKKAEVLETLINSP 86
Query: 384 HTKKNIVRKPTMKSLLKHLTKNTV 455
T+K + R+ +K+ + NT+
Sbjct: 87 RTRKILSRQGVVKTPEEEKESNTL 110
>SB_11195| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 596
Score = 29.9 bits (64), Expect = 2.1
Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 5/92 (5%)
Frame = +3
Query: 165 HPDPP-CHEVKNEQLKVETKTEHSESHHA--PI*KSIMKRKVKKVLSHQVKNLMKRNLPK 335
+PD P C +K + E +T S SH+ P ++ ++ + + NL+ +L +
Sbjct: 194 NPDSPLCLRLKFSFVSHERRTRSSTSHNLVLPQPRTDAGKRTFSFSAVSLFNLLPPSLKQ 253
Query: 336 TTMKKKKVLNPNQLKNHTK--KNIVRKPTMKS 425
+ ++LNPNQL+N T K VR KS
Sbjct: 254 --LADSRILNPNQLQNVTSLAKKKVRGSQEKS 283
>SB_13243| Best HMM Match : COX17 (HMM E-Value=1.7)
Length = 483
Score = 29.5 bits (63), Expect = 2.7
Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Frame = +3
Query: 144 IEQHEKSHPDPPCHEVKNEQLKVETKTEHSESHHAPI*KSI-MKRKVKKVLSHQVKNLMK 320
IE E P + N+ + T S+ HH P ++I ++V ++ H +
Sbjct: 15 IEDEESERPSSVHVDPLNQSSQSYT-FRGSQEHHLPSIRNIGTNKEVLPIIDHAIPTREL 73
Query: 321 RNLPKTTMKK-KKVLNPNQLKNHTK 392
+LPKTT ++ KV + + H +
Sbjct: 74 SSLPKTTEEQPDKVKKKKKKRKHVR 98
>SB_48833| Best HMM Match : MgtE_N (HMM E-Value=0.34)
Length = 192
Score = 29.5 bits (63), Expect = 2.7
Identities = 25/124 (20%), Positives = 52/124 (41%), Gaps = 3/124 (2%)
Frame = +3
Query: 96 FNAVVKKFLPVNVEKKIEQHEKSHPDPPCHEVKNEQLKVETKTEHSESHHA-PI*KSIMK 272
F+A V+ L + + K + +EQ ++ T EH + + + K
Sbjct: 4 FSACVQFALVALFRVRTTFYTKGEKIKQLQNITSEQGQLNTLIEHLAKRQLNTLIEHLTK 63
Query: 273 RKVKKVLSHQVKNLMKRNLPKTTMKKKKVLNPNQLKNHTKKNI--VRKPTMKSLLKHLTK 446
R+++ ++ K + + T ++ +L + K I + K + +L+KHLTK
Sbjct: 64 RQLETLIERLTKRQLNTLIEHPTKRQLNILIEHLTKRQLNILIEHLTKRQLNTLIKHLTK 123
Query: 447 NTVN 458
+N
Sbjct: 124 RQLN 127
>SB_37866| Best HMM Match : CDC37 (HMM E-Value=0.81)
Length = 461
Score = 29.1 bits (62), Expect = 3.6
Identities = 23/85 (27%), Positives = 36/85 (42%)
Frame = +3
Query: 156 EKSHPDPPCHEVKNEQLKVETKTEHSESHHAPI*KSIMKRKVKKVLSHQVKNLMKRNLPK 335
E D + + +K +TEH++ A K K +KVL K L K
Sbjct: 104 ESKDDDKTVSDAMLDLMKGPMRTEHAQEVTAENKKPTKDEKTRKVL--------KSKLDK 155
Query: 336 TTMKKKKVLNPNQLKNHTKKNIVRK 410
KKK L ++ ++KK++V K
Sbjct: 156 VEKKKKSKLGKSKEAKNSKKSVVGK 180
>SB_23951| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 214
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +3
Query: 105 VVKKFLPVNVEKKIEQHEKSHPDP-PCHEVK 194
V K+ +PV V +K EQH+ S D PCH ++
Sbjct: 161 VEKRLVPVAVWRKGEQHQISMEDVIPCHNIE 191
>SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2193
Score = 29.1 bits (62), Expect = 3.6
Identities = 21/97 (21%), Positives = 45/97 (46%)
Frame = +3
Query: 111 KKFLPVNVEKKIEQHEKSHPDPPCHEVKNEQLKVETKTEHSESHHAPI*KSIMKRKVKKV 290
+KF+ + ++ + EK +++NE ++E + E + +A K + K K
Sbjct: 1673 QKFVEQRTDNEVLKEEKEKLLMQLKDLQNEVARLENQLEDLKKRNADYEKLLAKSGNKDD 1732
Query: 291 LSHQVKNLMKRNLPKTTMKKKKVLNPNQLKNHTKKNI 401
L ++NL KRN + +K++ + + N + I
Sbjct: 1733 L---LENLRKRNKQRENELQKQIADLQRKLNEAESKI 1766
>SB_6818| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1784
Score = 28.7 bits (61), Expect = 4.8
Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Frame = +3
Query: 183 HEVKNEQLKVETKTEHSESHHAPI*KSIMKRKVKKVLSHQVKNLM--KR-NLPKTTMKKK 353
HE++ + + T + E+ + + I R +K + +H V+ KR +LPK++ K
Sbjct: 1701 HELRKLIISLRTSIKDEEATYLSV--EIRNRPLKIIKNHPVREFRECKRLHLPKSSFLKG 1758
Query: 354 KVLNPNQLKNHTKKNIVRK 410
K + +H KK + +
Sbjct: 1759 KKFQETPMYHHRKKMLAAR 1777
>SB_56928| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 236
Score = 28.3 bits (60), Expect = 6.3
Identities = 18/77 (23%), Positives = 40/77 (51%)
Frame = -2
Query: 449 VLREVLQQRLHGGLPHYVFLRVILQLIRIQNFLFLHGCFR*VSLHEILHLMTQNFLHFSF 270
V+ L ++HG + Y FLRVI+ I +HG V L+++L ++ +L+
Sbjct: 2 VISAHLYPKVHGVVVLYQFLRVIISAIIYPK---VHGV---VVLYQVLKVVISAYLYPKV 55
Query: 269 HDALLDWGMMTLTVFCF 219
H+ ++ + ++ + + +
Sbjct: 56 HEVVVVYQVLRVVISAY 72
>SB_44267| Best HMM Match : DUF602 (HMM E-Value=1.1e-29)
Length = 482
Score = 28.3 bits (60), Expect = 6.3
Identities = 33/111 (29%), Positives = 47/111 (42%)
Frame = +3
Query: 171 DPPCHEVKNEQLKVETKTEHSESHHAPI*KSIMKRKVKKVLSHQVKNLMKRNLPKTTMKK 350
+P + + K E K + SE PI K + K KK K+ K + MKK
Sbjct: 232 EPKAKKSEGPIKKDEPKPKKSEG---PIKKD--EPKAKKSEGPMKKDEPKPKKSEGPMKK 286
Query: 351 KKVLNPNQLKNHTKKNIVRKPTMKSLLKHLTKNTVNP*KNYLLRATNHQAK 503
+ P + + KK+ KP K KH+ KN V K +L+A AK
Sbjct: 287 DEP-KPKKSEGPMKKDEA-KPAKKESSKHIEKNAV---KKSILKAPKRNAK 332
>SB_11642| Best HMM Match : LIM (HMM E-Value=1.4)
Length = 906
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +3
Query: 42 QPDGYIREVKYVADDLTGFNAVVKKFLPVNVEKKIEQHEKSHPDPP 179
QPD EV D F+A +++ P ++ + +E H K++P P
Sbjct: 751 QPDSQQLEVFREEWDGVAFDAAIEQAHPSDMWRLVEHHRKNYPRLP 796
>SB_5549| Best HMM Match : PT (HMM E-Value=1.9)
Length = 282
Score = 27.9 bits (59), Expect = 8.4
Identities = 23/100 (23%), Positives = 43/100 (43%)
Frame = +3
Query: 111 KKFLPVNVEKKIEQHEKSHPDPPCHEVKNEQLKVETKTEHSESHHAPI*KSIMKRKVKKV 290
K L + + + ++ K+ P + LK KT + S K+ +KR +K
Sbjct: 22 KTSLKTSPKTRRKKSPKTTPKTSLKTSRKTSLKTSRKTSLNASRKTSR-KTSLKRSLKTN 80
Query: 291 LSHQVKNLMKRNLPKTTMKKKKVLNPNQLKNHTKKNIVRK 410
K K +L KT++KK ++P Q + ++ R+
Sbjct: 81 PKTSPKTSPKISL-KTSLKKSPKISPKQARRQVERQAGRQ 119
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,753,326
Number of Sequences: 59808
Number of extensions: 241218
Number of successful extensions: 929
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 909
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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