Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0466
(699 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g79730.1 68414.m09300 hydroxyproline-rich glycoprotein family... 35 0.045
At5g37350.2 68418.m04487 RIO1 family protein similar to extragen... 31 0.73
At5g37350.1 68418.m04486 RIO1 family protein similar to extragen... 31 0.73
At2g24990.1 68415.m02988 RIO1 family protein similar to extragen... 31 0.73
At1g56660.1 68414.m06516 expressed protein 31 0.73
At1g52360.1 68414.m05909 coatomer protein complex, subunit beta ... 30 1.3
At4g32970.1 68417.m04690 expressed protein low similarity to SP|... 30 1.7
At4g40020.1 68417.m05666 hypothetical protein 29 2.2
At1g22530.1 68414.m02814 SEC14 cytosolic factor family protein /... 29 2.2
At5g61260.1 68418.m07687 chromosome scaffold protein-related con... 28 5.2
At5g22530.1 68418.m02629 expressed protein 28 5.2
At5g26820.1 68418.m03200 ferroportin-related low similarity to f... 28 6.8
At5g17660.1 68418.m02070 expressed protein contains Pfam profile... 28 6.8
At5g05490.2 68418.m00593 cohesion family protein SYN1, splice va... 28 6.8
At5g05490.1 68418.m00592 cohesion family protein SYN1, splice va... 28 6.8
At4g37170.1 68417.m05262 pentatricopeptide (PPR) repeat-containi... 28 6.8
At1g63200.1 68414.m07142 hypothetical protein 28 6.8
At5g61190.1 68418.m07676 zinc finger protein-related contains Pf... 27 9.0
At3g58720.1 68416.m06545 zinc finger (C3HC4-type RING finger) fa... 27 9.0
>At1g79730.1 68414.m09300 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 589
Score = 35.1 bits (77), Expect = 0.045
Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 3/89 (3%)
Frame = +3
Query: 138 KKIEQHEKSHPDPPCHEVKNEQLKVETKTEHSESHHAPI*KSIMKRKVKKVLSHQVKNLM 317
K++ + E++ PDP H ++ L K E E + + K++ + Q+KN
Sbjct: 103 KQVGRRERAKPDPSKHHHRSH-LPHSKKIETEEERRLRKKRELEKQRQDEKHRQQMKNSH 161
Query: 318 KRNLPKTTMKKKK---VLNPNQLKNHTKK 395
K +PK ++KK +L ++++N KK
Sbjct: 162 KSQMPKGHTEEKKPTPLLTTDRVENRLKK 190
>At5g37350.2 68418.m04487 RIO1 family protein similar to extragenic
suppressor of the bimD6 mutation (SUDD) [Emericella
nidulans] GI:2338556, RIO1 [Saccharomyces cerevisiae]
GI:1359602; contains Pfam profile PF01163: RIO1 family
Length = 385
Score = 31.1 bits (67), Expect = 0.73
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = +3
Query: 186 EVKNEQLKVETKTEHSESHHAPI*KSIMKRKVKKVLSHQVKNLMKRNLPKTTMK-KKKVL 362
E + E+ E E SE P K +++ KK + + + K PK+ K KKKV
Sbjct: 320 EEEEEEGSGEESEEESEKELGPEDKKAARKEHKKKVKEEKRESRKTKTPKSVKKRKKKVS 379
Query: 363 NPNQLK 380
P++ +
Sbjct: 380 KPHKTR 385
>At5g37350.1 68418.m04486 RIO1 family protein similar to extragenic
suppressor of the bimD6 mutation (SUDD) [Emericella
nidulans] GI:2338556, RIO1 [Saccharomyces cerevisiae]
GI:1359602; contains Pfam profile PF01163: RIO1 family
Length = 531
Score = 31.1 bits (67), Expect = 0.73
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = +3
Query: 186 EVKNEQLKVETKTEHSESHHAPI*KSIMKRKVKKVLSHQVKNLMKRNLPKTTMK-KKKVL 362
E + E+ E E SE P K +++ KK + + + K PK+ K KKKV
Sbjct: 466 EEEEEEGSGEESEEESEKELGPEDKKAARKEHKKKVKEEKRESRKTKTPKSVKKRKKKVS 525
Query: 363 NPNQLK 380
P++ +
Sbjct: 526 KPHKTR 531
>At2g24990.1 68415.m02988 RIO1 family protein similar to extragenic
suppressor of the bimD6 mutation (SUDD) [Emericella
nidulans] GI:2338556, RIO1 [Saccharomyces cerevisiae]
GI:1359602; contains Pfam profile PF01163: RIO1 family
Length = 537
Score = 31.1 bits (67), Expect = 0.73
Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Frame = +3
Query: 108 VKKFLPVNVEKKIEQHEKSHPDPPCHEVKNEQLKVETKTEHSESHHAPI*KSIMKRKVKK 287
+K LP E+KIE +++ + E E + ++ E SE K +++ KK
Sbjct: 447 LKDALPKIEEQKIEVNDEEKEEEGEEEEDGES-EEGSEEEESEEELGHEDKKAARKEHKK 505
Query: 288 VLSHQVKNLMKRNLPKTTMK-KKKVLNPNQLK 380
+ + + K PK+ K KKKV P++ +
Sbjct: 506 KVKEEKRESRKTKTPKSVKKRKKKVSKPHKTR 537
>At1g56660.1 68414.m06516 expressed protein
Length = 522
Score = 31.1 bits (67), Expect = 0.73
Identities = 28/100 (28%), Positives = 41/100 (41%), Gaps = 5/100 (5%)
Frame = +3
Query: 141 KIEQHEKSHP--DPPCHEVKNEQ---LKVETKTEHSESHHAPI*KSIMKRKVKKVLSHQV 305
K+E+HEK H HE E+ K + K E ES K K K + +S +
Sbjct: 107 KVEEHEKEHKKGKEKKHEELEEEKEGKKKKNKKEKDESGPEEKNKKADKEKKHEDVSQEK 166
Query: 306 KNLMKRNLPKTTMKKKKVLNPNQLKNHTKKNIVRKPTMKS 425
+ L + + K K+K + K KK +K KS
Sbjct: 167 EELEEEDGKKNKKKEKDESGTEEKKKKPKKEKKQKEESKS 206
>At1g52360.1 68414.m05909 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); similar to (SP:O55029) Coatomer
beta' subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:O55029) [Mus musculus]; similar to GI:298096 from
[Homo sapiens]
Length = 926
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +3
Query: 120 LPVNVEKKIEQHEKSHPDPPCHEVKNEQLKVETKTEHSESHH 245
L V E+ +E + H + E NEQ + EH E HH
Sbjct: 843 LQVEEEESLENGDMDHEEVVAEENGNEQRNEDDVAEHVEEHH 884
>At4g32970.1 68417.m04690 expressed protein low similarity to
SP|Q13061 Triadin {Homo sapiens}
Length = 750
Score = 29.9 bits (64), Expect = 1.7
Identities = 31/116 (26%), Positives = 53/116 (45%), Gaps = 9/116 (7%)
Frame = +3
Query: 153 HEKSHPDPPCHEVKNEQLK-VETKTEHS----ESHHAPI*KSIMKRKVKKVLSHQVKNLM 317
H+KS PD H+V + + +E +E+ E H + +S+ +R + +LSH +
Sbjct: 168 HDKSGPDNCTHDVYDSLVDAIERVSEYEGYIFEGSHG-LSQSVFRR-MSTLLSHPPQRCA 225
Query: 318 KRNLPKTTMKKKKVLNPNQLKNHT---KKNIVRKP-TMKSLLKHLTKNTVNP*KNY 473
+ +LPK KK V + T K+ + +KP T + L K + K Y
Sbjct: 226 QVDLPKPPAKKPAVSCDKSASDSTKGAKQPLEKKPKTNTKRIHSLGKEKTSDFKKY 281
>At4g40020.1 68417.m05666 hypothetical protein
Length = 615
Score = 29.5 bits (63), Expect = 2.2
Identities = 30/89 (33%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
Frame = +3
Query: 132 VEKKIEQHEKSHPDPPCHEVKNEQLKVETKTEHSESHHAPI*KSIMKRKVKKVLSHQVKN 311
VEKKIE+ EK + K E K K EHSE + K KK +HQ N
Sbjct: 394 VEKKIEEKEKKEEKKENKKEKKESKK--EKKEHSEK---------KEDKEKKEQTHQ--N 440
Query: 312 LMKRNLPKT-TMKKKKVLNPNQLKNHTKK 395
KR + KT + K+ + N H K+
Sbjct: 441 FDKRMIGKTCSFSIMKLAHHNHNHKHNKE 469
>At1g22530.1 68414.m02814 SEC14 cytosolic factor family protein /
phosphoglyceride transfer family protein contains Pfam
PF00650 : CRAL/TRIO domain; contains Pfam PF03765 :
CRAL/TRIO, N-terminus; similar to SEC14-like protein 2
(Alpha-tocopherol associated protein) (TAP) (bTAP)
(Fragment) (SP:P58875) {Bos taurus}
Length = 683
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/66 (24%), Positives = 28/66 (42%)
Frame = +3
Query: 135 EKKIEQHEKSHPDPPCHEVKNEQLKVETKTEHSESHHAPI*KSIMKRKVKKVLSHQVKNL 314
E+K+E+ + + EVK E+ +E +T+ E AP K ++ + V
Sbjct: 126 EEKVEEKKTEETEEKKEEVKTEEKSLEAETKEEEKSAAPATVETKKEEILAAPAPIVAET 185
Query: 315 MKRNLP 332
K P
Sbjct: 186 KKEETP 191
>At5g61260.1 68418.m07687 chromosome scaffold protein-related
contains weak similarity to chromosome scaffold protein
p85 [Moneuplotes crassus] gi|25990101|gb|AAN75020
Length = 496
Score = 28.3 bits (60), Expect = 5.2
Identities = 23/82 (28%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
Frame = +3
Query: 126 VNVEKKIEQHEKSHPDPPCHEVKNEQLKVETKTEHSESHHAPI*KSIMK-RKV--KKVLS 296
+ +K++ Q K+ + +K+ +L VETKT+ E K +++ RKV KK +
Sbjct: 376 IKFKKRVVQELKTQSEGKKKNLKDRRLGVETKTDSCEGSKRE--KVVLRHRKVEGKKKMI 433
Query: 297 HQVKNLMKRNLPK-TTMKKKKV 359
N+++ + K T ++K KV
Sbjct: 434 TLFNNVIEETVNKLTKVRKHKV 455
>At5g22530.1 68418.m02629 expressed protein
Length = 139
Score = 28.3 bits (60), Expect = 5.2
Identities = 26/90 (28%), Positives = 39/90 (43%)
Frame = +3
Query: 192 KNEQLKVETKTEHSESHHAPI*KSIMKRKVKKVLSHQVKNLMKRNLPKTTMKKKKVLNPN 371
K +Q K E K +E P+ + K V++ Q K L LP+ KKKK + +
Sbjct: 15 KKKQSKKEAKPVKTEILPEPVGE---KEDVERKEGIQAKPLRTEGLPEPVEKKKKDVKYS 71
Query: 372 QLKNHTKKNIVRKPTMKSLLKHLTKNTVNP 461
K +K + KP + H+ N V P
Sbjct: 72 ACKKMPEK-CMFKP-KPEWISHVGSNDVGP 99
>At5g26820.1 68418.m03200 ferroportin-related low similarity to
ferroportin1 [Danio rerio] GI:7109245
Length = 598
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = -3
Query: 616 FHVSLLRVRFLLHVQYAPVRHEELHA--WMALR 524
FH + R RFL V ++ VR+ H+ W++LR
Sbjct: 18 FHFPVDRSRFLSPVAFSSVRYHRFHSCRWLSLR 50
>At5g17660.1 68418.m02070 expressed protein contains Pfam profile
PF02390: Putative methyltransferase
Length = 312
Score = 27.9 bits (59), Expect = 6.8
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = +3
Query: 363 NPNQLKNHTKKNIVRKPTMKSLLKHL 440
+P+ K H K+ +V+KP + S+L++L
Sbjct: 208 DPHFKKRHQKRRVVQKPLVNSILQNL 233
>At5g05490.2 68418.m00593 cohesion family protein SYN1, splice
variant 1 (SYN1) identical to SYN1 splice variant 1
[Arabidopsis thaliana] GI:6453715
Length = 617
Score = 27.9 bits (59), Expect = 6.8
Identities = 16/56 (28%), Positives = 26/56 (46%)
Frame = +3
Query: 270 KRKVKKVLSHQVKNLMKRNLPKTTMKKKKVLNPNQLKNHTKKNIVRKPTMKSLLKH 437
KRKV+ + +++ + N+P T + +K P QL KN T S +H
Sbjct: 314 KRKVRGTIRPDMESFKRANMPPTQLFEKDSSYPPQLYQLWSKNTQVLQTSSSESRH 369
>At5g05490.1 68418.m00592 cohesion family protein SYN1, splice
variant 1 (SYN1) identical to SYN1 splice variant 1
[Arabidopsis thaliana] GI:6453715
Length = 627
Score = 27.9 bits (59), Expect = 6.8
Identities = 16/56 (28%), Positives = 26/56 (46%)
Frame = +3
Query: 270 KRKVKKVLSHQVKNLMKRNLPKTTMKKKKVLNPNQLKNHTKKNIVRKPTMKSLLKH 437
KRKV+ + +++ + N+P T + +K P QL KN T S +H
Sbjct: 324 KRKVRGTIRPDMESFKRANMPPTQLFEKDSSYPPQLYQLWSKNTQVLQTSSSESRH 379
>At4g37170.1 68417.m05262 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 691
Score = 27.9 bits (59), Expect = 6.8
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -3
Query: 652 VHGYVLQRRADSFHVSLLR 596
+HG++L+R SFH SL R
Sbjct: 12 LHGFILKRNLSSFHASLKR 30
>At1g63200.1 68414.m07142 hypothetical protein
Length = 216
Score = 27.9 bits (59), Expect = 6.8
Identities = 9/27 (33%), Positives = 20/27 (74%)
Frame = +3
Query: 279 VKKVLSHQVKNLMKRNLPKTTMKKKKV 359
+KKV+ ++ ++K ++PK +KK+K+
Sbjct: 180 IKKVVKRDIEQVVKSHVPKDVVKKQKL 206
>At5g61190.1 68418.m07676 zinc finger protein-related contains Pfam
profile PF04396: Protein of unknown function DUF537,
weak hit to PF00096: Zinc finger C2H2 type
Length = 977
Score = 27.5 bits (58), Expect = 9.0
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +3
Query: 126 VNVEKKIEQHEKSHPDPPCHEVKNE 200
VNV K +E +K P+P E +N+
Sbjct: 920 VNVAKNLEDEQKHKPEPKAQEAENK 944
>At3g58720.1 68416.m06545 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 238
Score = 27.5 bits (58), Expect = 9.0
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Frame = +3
Query: 297 HQVKNLMKRNLPKTTMK--KKKVLNPNQLKNHTKKNIVRKPTMKSLLKHLTKNTVNP-*K 467
HQ+ NL + ++ ++ V N + + ++ + +LKHLTK T NP K
Sbjct: 49 HQIPIRNSNNLRRQHLEALRQAVHNQSTRPESSSRSSSQTNEEDEILKHLTKETYNPVPK 108
Query: 468 NYLLRATNHQAKN 506
+ LLR+ + +N
Sbjct: 109 STLLRSLSLYYRN 121
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,252,106
Number of Sequences: 28952
Number of extensions: 170727
Number of successful extensions: 623
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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