Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0465
         (697 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    23   3.7  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    22   4.8  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    22   4.8  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   4.8  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   4.8  

>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 6/27 (22%), Positives = 16/27 (59%)
 Frame = +3

Query: 42  SNFFKYLFKNYFRTVLQSNFVLRLHYL 122
           +N +KY + NY + +   N+++ +  +
Sbjct: 326 NNNYKYNYNNYNKKLYYKNYIINIEQI 352


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +3

Query: 18  HTNVNPL*SNFFKYLFKNYFRTVLQSNFVLRLHYLHF 128
           + N N   +N +K L+KNY   + Q    + ++Y +F
Sbjct: 102 NNNYNNNYNNNYKKLYKNYIINIEQIPVPVPVYYGNF 138


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +3

Query: 18  HTNVNPL*SNFFKYLFKNYFRTVLQSNFVLRLHYLHF 128
           + N N   +N +K L+KNY   + Q    + ++Y +F
Sbjct: 102 NNNYNNNYNNNYKKLYKNYIINIEQIPVPVPVYYGNF 138


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 687 VYYQRWQSVHLDKKNVIDMS 628
           +Y+Q+ Q V  +KKNV  MS
Sbjct: 744 MYHQQLQGVAKNKKNVGSMS 763


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = -2

Query: 651 KKNVIDMSIQIDLNIIVSFKEYG 583
           K   +D+++ +DL+I  + +EYG
Sbjct: 672 KHKDVDVTLPLDLHIQNAIREYG 694


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,011
Number of Sequences: 438
Number of extensions: 4341
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)