Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0464
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23171-3|AAC46706.1| 1020|Caenorhabditis elegans Hypothetical pr...    28   5.6  
Z68227-4|CAA92518.1|  480|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z68227-3|CAA92519.1|  507|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>U23171-3|AAC46706.1| 1020|Caenorhabditis elegans Hypothetical
           protein K02A2.3 protein.
          Length = 1020

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -2

Query: 567 KAFYEENVFCTSLQDKINVAA*KIFCTYY 481
           K+ Y E+VFC ++ +    A   +FCT+Y
Sbjct: 298 KSLYLESVFCANVNNDEASAEDDVFCTHY 326


>Z68227-4|CAA92518.1|  480|Caenorhabditis elegans Hypothetical
           protein F49C12.5b protein.
          Length = 480

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 55  YFTFHYLRMIARITCPG 5
           Y+ +HY   I+ ITCPG
Sbjct: 415 YYKYHYSGRISEITCPG 431


>Z68227-3|CAA92519.1|  507|Caenorhabditis elegans Hypothetical
           protein F49C12.5a protein.
          Length = 507

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 55  YFTFHYLRMIARITCPG 5
           Y+ +HY   I+ ITCPG
Sbjct: 442 YYKYHYSGRISEITCPG 458


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,431,218
Number of Sequences: 27780
Number of extensions: 212245
Number of successful extensions: 461
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 461
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)