Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0464
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               27   0.17 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   2.1  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             23   2.1  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    22   6.4  

>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 27.1 bits (57), Expect = 0.17
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -2

Query: 78  N*KKYIFHISLFITCV*LRESHVL 7
           N KKY+ + S FITC  L +SH++
Sbjct: 67  NIKKYLTNYSCFITCA-LEKSHII 89


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 125 LKKINDLFYNRQKNKLIKKNIYFIFHFSL 39
           L+K    F ++  NK  + N+Y  FH +L
Sbjct: 240 LQKYTRSFAHQSINKEARSNLYLPFHLTL 268


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 125 LKKINDLFYNRQKNKLIKKNIYFIFHFSL 39
           L+K    F ++  NK  + N+Y  FH +L
Sbjct: 235 LQKYTRSFAHQSINKEARSNLYLPFHLTL 263


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -3

Query: 47  FSLLAYDCANHMSW 6
           F+LL YD  N  SW
Sbjct: 206 FALLVYDFRNSRSW 219


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,268
Number of Sequences: 438
Number of extensions: 2754
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)