Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0463
(479 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1071.05 |||S-adenosylmethionine-dependent methyltransferase ... 27 1.9
SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces p... 27 1.9
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha... 26 2.6
SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2 |Sch... 25 4.5
SPBC216.01c ||SPBC713.13c|DNA damage response protein |Schizosac... 25 4.5
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c... 25 5.9
SPBC21C3.19 |||DUF1960 family protein|Schizosaccharomyces pombe|... 25 5.9
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R... 25 5.9
SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein Phf1... 25 5.9
SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomy... 25 7.8
>SPAC1071.05 |||S-adenosylmethionine-dependent methyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 339
Score = 26.6 bits (56), Expect = 1.9
Identities = 13/55 (23%), Positives = 25/55 (45%)
Frame = -3
Query: 231 ISSTFAHFSTRLKLLADSTVGKLCFKFKKHVLRFSVFCWKHSGPPSAMNKAIRSP 67
+ + F++RL+ L D K + S+ W+ PPS ++ + +SP
Sbjct: 280 VGGSILEFNSRLQKLVDDPNSLKAIKTSTQNVGRSIVYWEKEFPPSNIDSSPQSP 334
>SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 404
Score = 26.6 bits (56), Expect = 1.9
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +2
Query: 155 LKQSFPTVESANNLSLVEKCAKVDEMTSCIVKSPKSVPHRH 277
+ + T+ S N S+ EK K+D + S + K + H H
Sbjct: 41 INSTLTTLISQENASMDEKIEKIDSLLSRVSTVKKKMKHLH 81
>SPAC4F8.11 |||WD repeat protein, human WDR24
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 846
Score = 26.2 bits (55), Expect = 2.6
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = -1
Query: 206 QQGSSYWRIPQWGSSVSNLKSMS*DSQSFAGSTQGRLP 93
Q+ SS R+ + S++S+LKS SQ+ GST +P
Sbjct: 376 QRLSSLNRVASFESNISSLKSALYASQNSDGSTSNPVP 413
>SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 681
Score = 25.4 bits (53), Expect = 4.5
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +2
Query: 173 TVESANNLSLVEKCAKVD-EMTSCIVKSPKSVPHRHPQTWRNH 298
T E A +SL E+ + + E + ++ PK + RH + W +H
Sbjct: 527 TPEQAAFISLFEETSTLHIEKAAELLDQPKEIVERHLKFWLHH 569
>SPBC216.01c ||SPBC713.13c|DNA damage response protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 836
Score = 25.4 bits (53), Expect = 4.5
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +2
Query: 146 FLNLKQSFPTVESANNLSLVEKCAKVDEMTSCIVKSPKSV 265
+LN K P +ES NNLS + + + S +SPK+V
Sbjct: 661 YLN-KNYRPQLESLNNLSTFSELLNIIDGLSSDSRSPKTV 699
>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1717
Score = 25.0 bits (52), Expect = 5.9
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -1
Query: 290 AMFAGVGVEHSSGISRYRRSSHQLLRIFQ 204
A++ G+G+ HS RYR+ L R Q
Sbjct: 1220 ALYRGIGIHHSGLNRRYRQIVEVLFRCGQ 1248
>SPBC21C3.19 |||DUF1960 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 106
Score = 25.0 bits (52), Expect = 5.9
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +2
Query: 53 VCYKDGDRIALFIAEGGPECFQQKTENLKTCFL-NLKQSFPTVESANN 193
VCY+ D + IA GP+ + + + KT L + SF ++NN
Sbjct: 11 VCYQPEDTTFIIIASNGPDVMRWRKD--KTVPLTEIVDSFQVFTTSNN 56
>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
Rec11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 923
Score = 25.0 bits (52), Expect = 5.9
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = -2
Query: 451 DFLSKIYLKEAFKGH*FCDGT 389
+F+SK+Y+++AF G F + T
Sbjct: 189 EFISKVYVEDAFLGDSFMETT 209
>SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein
Phf1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 461
Score = 25.0 bits (52), Expect = 5.9
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Frame = +2
Query: 62 KDGDRIALF---IAEGGPECFQQK--TENLKTCFLNLKQSFPTVESANNLSLVEKCAKVD 226
+D +RI + +AEG + Q+ E +KT K P + N +L K KVD
Sbjct: 130 EDDNRIPFYDLDVAEGAEDDLQEDFHVEGMKTKS-GRKIQRPVAYNPNATALKRKSRKVD 188
Query: 227 EMTSCIV 247
+T C V
Sbjct: 189 MVTLCSV 195
>SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 314
Score = 24.6 bits (51), Expect = 7.8
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +2
Query: 365 VRLLSVNTSAITKLMTFE 418
VRL +NTS+ LMTFE
Sbjct: 63 VRLYDINTSSQMPLMTFE 80
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,876,810
Number of Sequences: 5004
Number of extensions: 35434
Number of successful extensions: 100
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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