Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0463
         (479 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_05_0068 - 18782658-18782984,18784634-18784783,18784853-187857...    29   2.6  
10_05_0042 + 8481227-8481764,8482291-8482418,8483349-8483933,848...    28   4.5  
08_01_0122 + 967983-968463,970082-970342,970471-971346,971837-97...    27   6.0  
10_08_0305 - 16644276-16644290,16644611-16645258,16646764-166468...    27   7.9  
03_02_0268 - 6994095-6994555,6996873-6996982,6997237-6998612           27   7.9  
01_01_0447 - 3327727-3328144,3328438-3328688,3328820-3328909,332...    27   7.9  

>11_05_0068 -
           18782658-18782984,18784634-18784783,18784853-18785716,
           18785877-18786005,18786112-18786188,18786507-18786607,
           18786772-18786896
          Length = 590

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +2

Query: 128 ENLKTCFLNLK--QSFPTVESANNLSLVEKCAKVDEMTSCIVKSP 256
           E+LK CF+NL+   +F  + S   L L   C   +++ S +  +P
Sbjct: 283 EHLKLCFMNLRPLPTFSGLRSLKTLDLALVCITTEDLESLLSYTP 327


>10_05_0042 +
           8481227-8481764,8482291-8482418,8483349-8483933,
           8484033-8484061,8485221-8485612,8486038-8486454,
           8486587-8486668,8487116-8487686
          Length = 913

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
 Frame = -1

Query: 359 NQSVLGRAVWQGESLRMNLI--SDSAMFAGVGVEHSSGISRYRRSSHQLLRIFQQGSSYW 186
           N S   R +    SL++ ++  SD     G+       ++   +S+H L R+F     + 
Sbjct: 687 NDSKFMRRLCDFRSLQVLILENSDQQDLTGICTLTKLSLNGLFKSAHHLQRLFLSDWQFS 746

Query: 185 RIPQWGSSVSNLKSM 141
           R+P W   ++ L S+
Sbjct: 747 RVPSWIGELNVLHSL 761


>08_01_0122 +
           967983-968463,970082-970342,970471-971346,971837-972327
          Length = 702

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
 Frame = -1

Query: 323 ESLRMNLISDSAMFAGVGVEHSSGISRYRRSSHQLLRIFQQGSSYWRIPQWGSSVS-NLK 147
           ESL     S +A  + + VE+SSG       S Q LR+          P+W  SV  N++
Sbjct: 369 ESLEGRASSSNASSSLINVEYSSGWDTSSEGSQQGLRL---------SPEWSPSVRYNME 419

Query: 146 SMS*DSQSFAGS 111
            +   +Q FAG+
Sbjct: 420 EVECATQYFAGA 431


>10_08_0305 -
           16644276-16644290,16644611-16645258,16646764-16646865,
           16646980-16647111,16647574-16648242
          Length = 521

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 5/35 (14%)
 Frame = -2

Query: 277 VSVWNTLRG-----FHDTGGHLINFCAFFNKAQVI 188
           V +WN   G     F  + GH+IN CA+F  ++ I
Sbjct: 342 VKLWNVATGECSLKFSSSVGHIINSCAWFPNSEKI 376


>03_02_0268 - 6994095-6994555,6996873-6996982,6997237-6998612
          Length = 648

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +2

Query: 68  GDRIALFIAEG-GPECFQQKTENLKTCFLN 154
           G ++ L I  G GPE  QQ +E LK C +N
Sbjct: 413 GAKLLLVIQSGCGPELKQQASELLKLCTMN 442


>01_01_0447 -
           3327727-3328144,3328438-3328688,3328820-3328909,
           3329061-3329159,3329240-3329353,3329450-3329555,
           3329661-3329740,3329913-3330173,3330271-3330507,
           3330635-3330922
          Length = 647

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +2

Query: 11  INDAQNSTNQLIDFVCYKDGDRIALFIA 94
           I +A N ++QL+DF+   +G +I ++ A
Sbjct: 265 ICEASNKSSQLVDFLVQNNGKKIMVYFA 292


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,290,833
Number of Sequences: 37544
Number of extensions: 239456
Number of successful extensions: 697
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 697
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)