Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0463
(479 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37504| Best HMM Match : PIP5K (HMM E-Value=0) 29 1.5
SB_23320| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.5
SB_10902| Best HMM Match : SH3_1 (HMM E-Value=0) 29 2.6
SB_3077| Best HMM Match : fn3 (HMM E-Value=8e-28) 29 2.6
SB_56697| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.5
SB_27726| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.5
SB_48023| Best HMM Match : Sulfotransfer_1 (HMM E-Value=2.4e-07) 28 4.6
SB_2584| Best HMM Match : SPRY (HMM E-Value=0.014) 28 4.6
SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05) 27 6.1
SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.0
SB_19088| Best HMM Match : PSGP (HMM E-Value=2.5) 27 8.0
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.0
>SB_37504| Best HMM Match : PIP5K (HMM E-Value=0)
Length = 2119
Score = 29.5 bits (63), Expect = 1.5
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +2
Query: 317 KTLLATPLCPRQIDCTVRLLSVNTSAITKLMTFESF 424
KTL+ CP ++ CTV L N+ +TK+ F
Sbjct: 726 KTLMYLEGCPTELGCTVTLRGGNSFVLTKIKKIMQF 761
>SB_23320| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1136
Score = 29.5 bits (63), Expect = 1.5
Identities = 15/53 (28%), Positives = 29/53 (54%)
Frame = +2
Query: 116 QQKTENLKTCFLNLKQSFPTVESANNLSLVEKCAKVDEMTSCIVKSPKSVPHR 274
+++ +++K L+L T ES+N + EKC+ ++E + V K + HR
Sbjct: 992 RRQLDDIKKINLDLHNKLQTCESSNRQHM-EKCSALEENCARFVNQIKELEHR 1043
>SB_10902| Best HMM Match : SH3_1 (HMM E-Value=0)
Length = 824
Score = 28.7 bits (61), Expect = 2.6
Identities = 13/34 (38%), Positives = 15/34 (44%)
Frame = +1
Query: 244 REIPEECSTPTPANMAESLIKFMRKDSPCHTALP 345
R P E S P E+ + F RK P H LP
Sbjct: 337 RRFPNEISDKIPVPQTETSLSFERKILPSHQGLP 370
>SB_3077| Best HMM Match : fn3 (HMM E-Value=8e-28)
Length = 465
Score = 28.7 bits (61), Expect = 2.6
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +2
Query: 245 VKSPKSVPHRHPQTWRNH*SSSCAKTLLATPLCPRQIDCTVRLLSVNTSA 394
V + ++ P P+ +R H +SS A L TP+ P + +RL ++ A
Sbjct: 90 VTTDEAAPAYPPEDFRGHFASSVAVKLYWTPIPPETLRGALRLYRISYEA 139
>SB_56697| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 582
Score = 28.3 bits (60), Expect = 3.5
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +2
Query: 59 YKDGDRIALFIAEGGPECFQQKTENLKTCFLNLKQSFPTVESANNLS 199
Y G +I F+A+ +C + TENL+ N + T E+A LS
Sbjct: 46 YLHGFKIESFVAQNPFDCSIKCTENLRCQSFNYQSESSTSENACELS 92
>SB_27726| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 183
Score = 28.3 bits (60), Expect = 3.5
Identities = 16/48 (33%), Positives = 21/48 (43%)
Frame = -1
Query: 281 AGVGVEHSSGISRYRRSSHQLLRIFQQGSSYWRIPQWGSSVSNLKSMS 138
AG+ S GI RY + L R+FQ WR P V + +S
Sbjct: 111 AGIVTTTSCGIPRYVIKNIYLSRVFQYLGFLWRTPDMPKVVGTIVFLS 158
>SB_48023| Best HMM Match : Sulfotransfer_1 (HMM E-Value=2.4e-07)
Length = 417
Score = 27.9 bits (59), Expect = 4.6
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = +3
Query: 264 FHTDTRKHGGITDQVHAQRLSLPHRSAQDRLIAP 365
FH D R+ TD + Q SL HR A L AP
Sbjct: 153 FHCDFRELSYFTDFISLQYSSLSHRLASRALSAP 186
>SB_2584| Best HMM Match : SPRY (HMM E-Value=0.014)
Length = 408
Score = 27.9 bits (59), Expect = 4.6
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +2
Query: 128 ENLKTCFLN-LKQSFPTVESANNLSLVEKCAKVDEMTSCIVKSPKSVPHRHPQTWR 292
EN K +L + FP + AN + E+ + + ++ + S P P+TWR
Sbjct: 89 ENTKKRYLEKFGEHFPGQDDANIAKVYEELVNTRDRVTRLLATSLSEPTSPPETWR 144
>SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05)
Length = 1960
Score = 27.5 bits (58), Expect = 6.1
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 317 KTLLATPLCPRQIDCTVRLLSVNTSAITKLMTFES 421
KT++ TP R + T+ +VN SAI+ + ES
Sbjct: 1572 KTVITTPNTTRLVTSTISSSTVNVSAISTTSSIES 1606
Score = 27.1 bits (57), Expect = 8.0
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +2
Query: 320 TLLATPLCPRQIDCTVRLLSVNTSAITKLMTFES 421
T++ATP R + T+ +VN SAI+ + ES
Sbjct: 166 TVIATPNTTRLVTSTISSSTVNVSAISTTSSIES 199
Score = 27.1 bits (57), Expect = 8.0
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +2
Query: 320 TLLATPLCPRQIDCTVRLLSVNTSAITKLMTFES 421
T++ATP R + T+ +VN SAI+ + ES
Sbjct: 367 TVIATPNTTRLVTSTISSSTVNVSAISTTSSIES 400
Score = 27.1 bits (57), Expect = 8.0
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +2
Query: 320 TLLATPLCPRQIDCTVRLLSVNTSAITKLMTFES 421
T++ATP R + T+ +VN SAI+ + ES
Sbjct: 568 TVIATPNTTRLVTSTISSSTVNVSAISTTSSIES 601
Score = 27.1 bits (57), Expect = 8.0
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +2
Query: 320 TLLATPLCPRQIDCTVRLLSVNTSAITKLMTFES 421
T++ATP R + T+ +VN SAI+ + ES
Sbjct: 1372 TVIATPNTTRLVTSTISSSTVNVSAISTTSSIES 1405
Score = 27.1 bits (57), Expect = 8.0
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +2
Query: 320 TLLATPLCPRQIDCTVRLLSVNTSAITKLMTFES 421
T++ATP R + T+ +VN SAI+ + ES
Sbjct: 1774 TVIATPNTTRLVTSTISSSTVNVSAISTTSSIES 1807
>SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1229
Score = 27.1 bits (57), Expect = 8.0
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +2
Query: 320 TLLATPLCPRQIDCTVRLLSVNTSAITKLMTFES 421
T++ATP R + T+ +VN SAI+ + ES
Sbjct: 166 TVIATPNTTRLVTSTISSSTVNVSAISTTSSIES 199
Score = 27.1 bits (57), Expect = 8.0
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +2
Query: 320 TLLATPLCPRQIDCTVRLLSVNTSAITKLMTFES 421
T++ATP R + T+ +VN SAI+ + ES
Sbjct: 367 TVIATPNTTRLVTSTISSSTVNVSAISTTSSIES 400
>SB_19088| Best HMM Match : PSGP (HMM E-Value=2.5)
Length = 737
Score = 27.1 bits (57), Expect = 8.0
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +2
Query: 320 TLLATPLCPRQIDCTVRLLSVNTSAITKLMTFES 421
T++ATP R + T+ +VN SAI+ + ES
Sbjct: 277 TVIATPNTTRLVTSTISSSTVNVSAISTTSSIES 310
Score = 27.1 bits (57), Expect = 8.0
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +2
Query: 320 TLLATPLCPRQIDCTVRLLSVNTSAITKLMTFES 421
T++ATP R + T+ +VN SAI+ + ES
Sbjct: 478 TVIATPNTTRLVTSTISSSTVNVSAISTTSSIES 511
>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2870
Score = 27.1 bits (57), Expect = 8.0
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Frame = +2
Query: 170 PTVESANNLSLV-EKCAKVDEMTSCIVKS---PKSVPHRHPQTWRNH*SSSCAKTLLATP 337
PT+ ++ +S EKC K E ++ + P P H Q + S+SC L TP
Sbjct: 1826 PTICASKCISKCPEKCCKQPEPQPALLSTTPTPPPPPQPHQQQQQPTCSTSCLT--LCTP 1883
Query: 338 LCPRQ 352
CP++
Sbjct: 1884 DCPKK 1888
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,209,379
Number of Sequences: 59808
Number of extensions: 270962
Number of successful extensions: 766
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 766
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1001731762
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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