Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0463
         (479 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.              22   3.0  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   3.9  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   3.9  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   9.1  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   9.1  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            21   9.1  

>DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = -3

Query: 366 TVQSICLGQSGVARRV 319
           TVQS+C+ + G A+++
Sbjct: 28  TVQSVCMKEIGTAQQI 43


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 426 KKLSKVINFVMALVLT 379
           K+LSK INF  +L L+
Sbjct: 468 KELSKTINFTYSLALS 483


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = +2

Query: 116 QQKTENLKTCFLNLKQSFPTVESANNLSLVE 208
           +Q+T++L   F  L++  PT+ S + LS ++
Sbjct: 263 RQRTQSLNEAFAALRKIIPTLPS-DKLSKIQ 292


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = +2

Query: 209 KCAKVDEMTSCIVKSPKSVPHRHPQTWRNH*SS 307
           K  K +E T   +    S PH H    +NH S+
Sbjct: 610 KRGKYEEPTVGEISQDGSSPHFHQSPSQNHSSA 642


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = -3

Query: 477 FFFFFCL*KISYLKFI*KKLSKVINFVMALVLTERSLTVQSI 352
           F F +C+  I  + +  + +S V+N   AL    + + V S+
Sbjct: 216 FTFSYCIPMILIIYYYSQIVSHVVNHEKALREQAKKMNVDSL 257


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 114 KHSGPPSAMNKAIRSPSL 61
           K  GPP+  N  I SPS+
Sbjct: 352 KDQGPPNDGNGNILSPSI 369


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,595
Number of Sequences: 438
Number of extensions: 2205
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13051674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)