Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0463
(479 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g19480.1 68416.m02469 D-3-phosphoglycerate dehydrogenase, put... 29 2.1
At1g55265.1 68414.m06313 expressed protein contains Pfam profile... 28 2.8
At1g79760.1 68414.m09306 expressed protein 28 3.7
At4g22200.1 68417.m03209 potassium channel protein 2 (AKT2) (AKT... 27 5.0
At3g25610.1 68416.m03188 haloacid dehalogenase-like hydrolase fa... 27 5.0
At1g13210.1 68414.m01532 haloacid dehalogenase-like hydrolase fa... 27 5.0
At5g57600.1 68418.m07196 expressed protein 27 6.5
At4g23530.1 68417.m03391 expressed protein 27 6.5
At2g29180.1 68415.m03547 expressed protein 27 6.5
At5g06120.1 68418.m00680 Ran-binding protein, putative similar t... 27 8.7
At4g38070.1 68417.m05377 bHLH family protein contains Pfam profi... 27 8.7
At2g46970.1 68415.m05867 basic helix-loop-helix (bHLH) protein, ... 27 8.7
At1g22060.1 68414.m02759 expressed protein 27 8.7
>At3g19480.1 68416.m02469 D-3-phosphoglycerate dehydrogenase,
putative / 3-PGDH, putative similar to SP:O04130 from
[Arabidopsis thaliana]
Length = 588
Score = 28.7 bits (61), Expect = 2.1
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +2
Query: 125 TENLKTCFLNLKQSFPTVESANNLSLVEKCAKVDEMTSCIVKSPKSV 265
TE L ++L + + V+ + +LSL E C K+ + IV+S V
Sbjct: 52 TEKLGQAGIDLLKKYANVDCSYDLSLEELCTKISLCDALIVRSGTKV 98
>At1g55265.1 68414.m06313 expressed protein contains Pfam profile
PF04398: Protein of unknown function, DUF538
Length = 175
Score = 28.3 bits (60), Expect = 2.8
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = -3
Query: 255 GDFTIQEVISSTFAHFSTRLKLLADSTVGKLCFKFKKHV 139
GDFT+ ++ISS + FS +L + GKL + K V
Sbjct: 81 GDFTV-DLISSCYVKFSDQLVFYGKNIAGKLSYGSVKDV 118
>At1g79760.1 68414.m09306 expressed protein
Length = 299
Score = 27.9 bits (59), Expect = 3.7
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = -1
Query: 356 QSVLGRAVWQGESLRMNLISDSAMFAGVGVEHSSGISRYRRSSHQLLRIFQQ 201
+ V+GR + L NLIS S ++ H++ +R+ + + +FQQ
Sbjct: 232 KGVVGRPLLYKSDLHHNLISISFLYTSTTTLHNTSRKITKRTKKKTISLFQQ 283
>At4g22200.1 68417.m03209 potassium channel protein 2 (AKT2) (AKT3)
identical to potassium channel [Arabidopsis thaliana]
gi|1100898|gb|AAA97865; Note: also identical to AKT3
[Arabidopsis thaliana] gi|1172218|gb|AAA96153, which is
a truncated version of AKT2, PMID:10852932; member of
the 1 pore, 6 transmembrane (1P/6TM- Shaker-type) K+
channel family, PMID:11500563; identical to cDNA
inward-rectifying K+ channel (AKT3) GI:1172219
Length = 802
Score = 27.5 bits (58), Expect = 5.0
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 215 AKVDEMTSCIVKSPKSVPHRHPQTW 289
A +DE T +V+ PK + R+ TW
Sbjct: 130 AYIDERTQLLVREPKQIAVRYLSTW 154
>At3g25610.1 68416.m03188 haloacid dehalogenase-like hydrolase
family protein similar to Potential
phospholipid-transporting ATPase (EC 3.6.3.1) from Mus
musculus [SP|P98200, SP|P70704], {Bos taurus} SP|Q29449;
contains InterPro accession IPR005834: Haloacid
dehalogenase-like hydrolase
Length = 1202
Score = 27.5 bits (58), Expect = 5.0
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +1
Query: 289 AESLIKFMRKDSPCHTALPKTD 354
A L KF R + CHTA+P+TD
Sbjct: 509 AAVLQKFFRLLAVCHTAIPETD 530
>At1g13210.1 68414.m01532 haloacid dehalogenase-like hydrolase
family protein similar to Potential
phospholipid-transporting ATPase (EC 3.6.3.1)
(Chromaffin granule ATPase) from {Homo sapiens}
SP|Q9Y2Q0, {Mus musculus} SP|P98200, {Bos taurus}
SP|Q29449; contains InterPro accession IPR005834:
Haloacid dehalogenase-like hydrolase; ESTs gb|T45045 and
gb|AA394473 come from this gene
Length = 1203
Score = 27.5 bits (58), Expect = 5.0
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +1
Query: 289 AESLIKFMRKDSPCHTALPKTD 354
A L KF R + CHTA+P+TD
Sbjct: 508 AAVLQKFFRLLAVCHTAIPETD 529
>At5g57600.1 68418.m07196 expressed protein
Length = 287
Score = 27.1 bits (57), Expect = 6.5
Identities = 16/30 (53%), Positives = 20/30 (66%)
Frame = +2
Query: 173 TVESANNLSLVEKCAKVDEMTSCIVKSPKS 262
TVE + L ++EKC K +EM C VKS KS
Sbjct: 176 TVEDSVVLQMIEKCLK-EEM-ECGVKSEKS 203
>At4g23530.1 68417.m03391 expressed protein
Length = 396
Score = 27.1 bits (57), Expect = 6.5
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -3
Query: 153 FKKHVL-RFSVFCWKHSGPPSAMNKAIRSPS 64
F+KHV RFS S PPS+ + A+ PS
Sbjct: 39 FQKHVAERFSDLITSPSPPPSSSSSAVSQPS 69
>At2g29180.1 68415.m03547 expressed protein
Length = 169
Score = 27.1 bits (57), Expect = 6.5
Identities = 15/50 (30%), Positives = 28/50 (56%)
Frame = -1
Query: 260 SSGISRYRRSSHQLLRIFQQGSSYWRIPQWGSSVSNLKSMS*DSQSFAGS 111
S +SR + S ++LR+ Q+ + WR+ +S + +S DS S +G+
Sbjct: 31 SWSVSRRKILSFRVLRLHQEKTQLWRVSATPEEISQ-EIVSSDSSSSSGA 79
>At5g06120.1 68418.m00680 Ran-binding protein, putative similar to
SP|Q9UIA9 Ran-binding protein 16 {Homo sapiens};
contains Pfam profile PF03810: Importin-beta N-terminal
domain
Length = 1066
Score = 26.6 bits (56), Expect = 8.7
Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 8/85 (9%)
Frame = +2
Query: 194 LSLVEKCAKVDEMTSCIVKSPKSVPH-RHPQTWRNH*SSSCAKTLL-------ATPLCPR 349
LSL +C D + + I +S + + P +WR+ S + +PL
Sbjct: 213 LSLALRCVSFDFVGTSIDESTEEFGTVQIPTSWRSVLEDSSTLQIFFDYYGSTESPLSKE 272
Query: 350 QIDCTVRLLSVNTSAITKLMTFESF 424
++C VRL SV S T T +F
Sbjct: 273 ALECLVRLASVRRSLFTNDATRSNF 297
>At4g38070.1 68417.m05377 bHLH family protein contains Pfam profile:
PF00010 helix-loop-helix DNA-binding domain; PMID:
12679534; putative bHLH131 transcription factor
Length = 1513
Score = 26.6 bits (56), Expect = 8.7
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = +2
Query: 113 FQQKTENLKTCFLNLKQSFPTVESANNLSLVEKCAKVD 226
+++ E + C + L++ +ES +N ++ E C+KVD
Sbjct: 595 YKEMLEESEKCRVLLEEQISQLESDSNENIRELCSKVD 632
>At2g46970.1 68415.m05867 basic helix-loop-helix (bHLH) protein,
putative similar to PIF3 like basic Helix Loop Helix
protein (PIL1) [Arabidopsis thaliana] GI:22535492;
contains Myc-type, 'helix-loop-helix' dimerization
domain signature, PROSITE:PS00038
Length = 416
Score = 26.6 bits (56), Expect = 8.7
Identities = 16/66 (24%), Positives = 29/66 (43%)
Frame = +2
Query: 68 GDRIALFIAEGGPECFQQKTENLKTCFLNLKQSFPTVESANNLSLVEKCAKVDEMTSCIV 247
GD + +++ P+ ++ E + LK S +E N+S KC + +
Sbjct: 82 GDTQVVPVSQSKPQQDKETNEQMNNNKKKLKSS--KIEFERNVSKSNKCVESSTLIDVSA 139
Query: 248 KSPKSV 265
K PK+V
Sbjct: 140 KGPKNV 145
>At1g22060.1 68414.m02759 expressed protein
Length = 1999
Score = 26.6 bits (56), Expect = 8.7
Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 3/69 (4%)
Frame = +2
Query: 50 FVCYKDGDRIALFIAEGGPECFQQKTENLKTC---FLNLKQSFPTVESANNLSLVEKCAK 220
F C D +F C + E L C L ++ + VESA N LV +
Sbjct: 1350 FQCLMAADVQLIFTKIQSDICINEFAEQLSCCSNSHLEFQKKYTDVESALNHCLVNETRY 1409
Query: 221 VDEMTSCIV 247
+DE ++
Sbjct: 1410 MDENNQLLI 1418
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,941,204
Number of Sequences: 28952
Number of extensions: 193252
Number of successful extensions: 559
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 819227264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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