Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0462
(699 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC530.10c |anc1||adenine nucleotide carrier Anc1|Schizosacchar... 103 2e-23
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ... 58 1e-09
SPAC17H9.08 |||mitochondrial coenzyme A transporter|Schizosaccha... 48 1e-06
SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter |Schiz... 42 8e-05
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil... 37 0.002
SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomy... 34 0.017
SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier homolog|Schizosaccha... 32 0.069
SPBC83.13 |||mitochondrial tricarboxylic acid transporter|Schizo... 32 0.069
SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|ch... 31 0.12
SPAC139.02c |oac1||anion transporter|Schizosaccharomyces pombe|c... 31 0.16
SPAC19G12.05 |||mitochondrial citrate transporter|Schizosaccharo... 31 0.21
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce... 29 0.85
SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces pomb... 28 1.1
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 28 1.5
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho... 27 2.0
SPAC823.10c |||mitochondrial carrier with solute carrier repeats... 27 2.0
SPAC4G9.20c |||mitochondrial carrier with solute carrier repeats... 27 3.4
SPBC1703.13c |||inorganic phosphate transporter |Schizosaccharom... 26 6.0
SPCC18B5.05c |||phosphomethylpyrimidine kinase |Schizosaccharomy... 26 6.0
SPBC29A3.11c |||mitochondrial carboxylic acid transporter|Schizo... 26 6.0
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc... 26 6.0
SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr... 25 7.9
>SPBC530.10c |anc1||adenine nucleotide carrier
Anc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 322
Score = 103 bits (247), Expect = 2e-23
Identities = 50/80 (62%), Positives = 61/80 (76%), Gaps = 1/80 (1%)
Frame = +1
Query: 10 VSKTAVAPIERVKLLLQVQ-HVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVI 186
VSKTA APIERVKLL+Q Q + + RYKGI + F R E+G++S WRGN ANV+
Sbjct: 40 VSKTAAAPIERVKLLIQNQDEMIRAGRLSHRYKGIGECFKRTAAEEGVISLWRGNTANVL 99
Query: 187 RYFPTQALNFAFKDKYKQVF 246
RYFPTQALNFAFKDK+K++F
Sbjct: 100 RYFPTQALNFAFKDKFKKMF 119
Score = 74.9 bits (176), Expect = 1e-14
Identities = 37/63 (58%), Positives = 46/63 (73%), Gaps = 2/63 (3%)
Frame = +3
Query: 327 SLCFVYPLDFARTRLAADV--GKGDGQREFSGLGNCISKIFKSDGLIGLYRGFGVSVQGI 500
SL FVY LD+ARTRLA D K G+R+F+GL + K ++SDGL GLYRGFG SV GI
Sbjct: 146 SLLFVYSLDYARTRLANDAKSAKKGGERQFNGLVDVYRKTYRSDGLRGLYRGFGPSVVGI 205
Query: 501 IIY 509
++Y
Sbjct: 206 VVY 208
Score = 33.5 bits (73), Expect = 0.030
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +2
Query: 509 RASYFGFYDTARGM-LPDPKNTPIVISWAIAQTVTTVAGIISYP 637
R YFG YDT + + L P + S+ + VTT +G+ SYP
Sbjct: 209 RGLYFGMYDTLKPVVLVGPLEGNFLASFLLGWAVTTGSGVASYP 252
Score = 30.3 bits (65), Expect = 0.28
Identities = 16/61 (26%), Positives = 29/61 (47%)
Frame = +1
Query: 73 SKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLG 252
S + ++++ G+VD + + + GL +RG +V+ + L F D K V L
Sbjct: 166 SAKKGGERQFNGLVDVYRKTYRSDGLRGLYRGFGPSVVGIVVYRGLYFGMYDTLKPVVLV 225
Query: 253 G 255
G
Sbjct: 226 G 226
Score = 25.8 bits (54), Expect = 6.0
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = +3
Query: 408 FSGLGNCISKIFKSDGLIGLYRG 476
+ G+G C + +G+I L+RG
Sbjct: 71 YKGIGECFKRTAAEEGVISLWRG 93
>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 58.0 bits (134), Expect = 1e-09
Identities = 30/77 (38%), Positives = 47/77 (61%)
Frame = +1
Query: 10 VSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 189
VS+TAV+P+ER+K++ QVQ+ ++ Y + V+I +GL+ F+RGN N +R
Sbjct: 33 VSRTAVSPLERMKIIFQVQN-------NKEYTSLTSTLVKIWNREGLIGFFRGNGTNCLR 85
Query: 190 YFPTQALNFAFKDKYKQ 240
FP A+ FA + KQ
Sbjct: 86 AFPYGAVQFATFNMLKQ 102
Score = 31.9 bits (69), Expect = 0.091
Identities = 16/69 (23%), Positives = 32/69 (46%)
Frame = +1
Query: 10 VSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 189
+ +T P + ++ QV + YK I A I K +G+ F+RG +N+++
Sbjct: 239 IGQTLTFPADVLRRRFQVNRIP---GIGHNYKNIKSAIFHIYKTEGINGFFRGYSSNMLK 295
Query: 190 YFPTQALNF 216
P ++ +
Sbjct: 296 IIPVMSITW 304
Score = 29.9 bits (64), Expect = 0.37
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = +3
Query: 342 YPLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRGFGVSVQGII 503
+P D R R + G G + + + I I+K++G+ G +RG+ ++ II
Sbjct: 245 FPADVLRRRFQVNRIPGIGHN-YKNIKSAIFHIYKTEGINGFFRGYSSNMLKII 297
Score = 29.1 bits (62), Expect = 0.64
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +3
Query: 402 REFSGLGNCISKIFKSDGLIGLYRGFGVS 488
+E++ L + + KI+ +GLIG +RG G +
Sbjct: 54 KEYTSLTSTLVKIWNREGLIGFFRGNGTN 82
>SPAC17H9.08 |||mitochondrial coenzyme A
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 326
Score = 48.0 bits (109), Expect = 1e-06
Identities = 26/80 (32%), Positives = 44/80 (55%)
Frame = +1
Query: 10 VSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 189
V+K+ VAP++RVK+L Q H S + A R+ G+ A I GL ++G+ A + R
Sbjct: 30 VAKSVVAPLDRVKILYQTNHASYRGYAYSRH-GLYKAIKHIYHVYGLHGLYQGHTATLYR 88
Query: 190 YFPTQALNFAFKDKYKQVFL 249
FP + F ++ ++V +
Sbjct: 89 VFPYAGIKFVAYEQVRRVLI 108
>SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 298
Score = 41.9 bits (94), Expect = 8e-05
Identities = 20/46 (43%), Positives = 29/46 (63%)
Frame = +3
Query: 339 VYPLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRG 476
+YPLD +TR+ VGK D ++G +C+ KI K++G LYRG
Sbjct: 26 LYPLDVVKTRMQLSVGKSD----YNGTFDCLKKIVKNEGPHRLYRG 67
Score = 37.9 bits (84), Expect = 0.001
Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 3/94 (3%)
Frame = +1
Query: 22 AVAPIERVKLL--LQVQHVSKQIAADQR-YKGIVDAFVRIPKEQGLLSFWRGNFANVIRY 192
AVA I V L L V Q++ + Y G D +I K +G +RG ++
Sbjct: 16 AVAGISEVLTLYPLDVVKTRMQLSVGKSDYNGTFDCLKKIVKNEGPHRLYRGILPPILME 75
Query: 193 FPTQALNFAFKDKYKQVFLGGLTRRRSSGVTSLV 294
P +AL FA D Y +++ R+ SS S++
Sbjct: 76 APKRALKFASNDTYSKLWRKVFKRKDSSPALSIL 109
Score = 31.5 bits (68), Expect = 0.12
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Frame = +1
Query: 25 VAPIERVKLLLQ-VQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPT 201
V P E +K+ LQ V++ SK Y G VD F +I K++ +L+ + G A + R+
Sbjct: 122 VVPFELMKIRLQDVKNASK-------YNGTVDCFTKIVKQERILALYNGFEATMWRHVVW 174
Query: 202 QALNFAFKDKYK 237
A F K +
Sbjct: 175 NAGYFGVIQKIR 186
>SPBC12D12.05c |||mitochondrial carrier, calcium binding
subfamily|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 37.1 bits (82), Expect = 0.002
Identities = 19/74 (25%), Positives = 36/74 (48%)
Frame = +1
Query: 19 TAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFP 198
T V P+ ++ LQ Q S A Y G +D F + K +G ++G N+++ P
Sbjct: 351 TIVFPLNVIRTRLQTQGTSAHPAT---YDGFIDCFYKTTKNEGFRGLYKGLSPNLLKVAP 407
Query: 199 TQALNFAFKDKYKQ 240
+ A+++ + K+
Sbjct: 408 SVAISYLVYENCKK 421
Score = 33.9 bits (74), Expect = 0.022
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = +3
Query: 336 FVYPLDFARTRL-AADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIY 509
F+YP+D + R+ +D+ +G + L N +++KS G+ G YRG V + G+ Y
Sbjct: 245 FIYPVDTLKFRIQCSDLSRGQHGKSII-LSNA-KELYKSVGIRGYYRGVLVGILGMFPY 301
Score = 29.5 bits (63), Expect = 0.48
Identities = 19/87 (21%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Frame = +1
Query: 10 VSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVR-IPKEQGLLSFWRGNFANVI 186
V++ + P++ +K +Q +S+ Q K I+ + + + K G+ ++RG ++
Sbjct: 241 VAQMFIYPVDTLKFRIQCSDLSR----GQHGKSIILSNAKELYKSVGIRGYYRGVLVGIL 296
Query: 187 RYFPTQALNFAFKDKYKQVFLGGLTRR 267
FP A + + K+ ++G L R
Sbjct: 297 GMFPYSATDLGTFEGLKRTWIGILASR 323
>SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 361
Score = 34.3 bits (75), Expect = 0.017
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +3
Query: 345 PLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRGFGVSVQGI 500
P+ +TRL D G + S + +CI K + +G GLY+G S+ G+
Sbjct: 182 PIWLVKTRLQLDKKSGQAAQYRSSI-DCIIKTIRLEGFRGLYKGLSASLLGV 232
Score = 29.9 bits (64), Expect = 0.37
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +1
Query: 73 SKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNF 216
S I +Y G++ F + EQG++ + G A+++R P + F
Sbjct: 303 SPSINGTPKYTGLIQCFKLVWMEQGIVGLYGGLTAHLLRVVPNACILF 350
>SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 338
Score = 32.3 bits (70), Expect = 0.069
Identities = 11/23 (47%), Positives = 19/23 (82%)
Frame = +3
Query: 414 GLGNCISKIFKSDGLIGLYRGFG 482
G+ + + ++KS+GL+GL+RGFG
Sbjct: 283 GIRHVLGGLYKSEGLLGLFRGFG 305
>SPBC83.13 |||mitochondrial tricarboxylic acid
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 293
Score = 32.3 bits (70), Expect = 0.069
Identities = 18/48 (37%), Positives = 28/48 (58%)
Frame = +3
Query: 333 CFVYPLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRG 476
C+ PL+ AR + + + KG Q G+ I I+K++G+ GLYRG
Sbjct: 220 CWNQPLEVARVEMQS-LTKGI-QHSSPGIMQTIMSIYKNNGIKGLYRG 265
>SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 271
Score = 31.5 bits (68), Expect = 0.12
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = +3
Query: 423 NCISKIFKSDGLIGLYRGFGVSVQGIIIYVPHT 521
N IS + +S+GL G YRG+ + G+ IY+P T
Sbjct: 121 NTISTLARSEGLKGFYRGYWM---GVAIYLPTT 150
Score = 25.4 bits (53), Expect = 7.9
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = +1
Query: 109 IVDAFVRIPKEQGLLSFWRGNFANVIRYFPT 201
+++ + + +GL F+RG + V Y PT
Sbjct: 119 VINTISTLARSEGLKGFYRGYWMGVAIYLPT 149
>SPAC139.02c |oac1||anion transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 320
Score = 31.1 bits (67), Expect = 0.16
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +3
Query: 423 NCISKIFKSDGLIGLYRGFGVSVQGIIIYVPHT 521
+CI K +S+G LY+GFG + I PHT
Sbjct: 271 DCILKTIRSEGFFALYKGFGAHLARI---APHT 300
>SPAC19G12.05 |||mitochondrial citrate
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 291
Score = 30.7 bits (66), Expect = 0.21
Identities = 18/71 (25%), Positives = 32/71 (45%)
Frame = +1
Query: 31 PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQAL 210
PI+ VK +Q ++A + YK + +I + GLL FW G + R + +
Sbjct: 223 PIDTVKSRMQ------SLSASKEYKNSIHCAYKILTQDGLLRFWSGATPRLARLILSGGI 276
Query: 211 NFAFKDKYKQV 243
F +K ++
Sbjct: 277 VFTVYEKVMEI 287
>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 371
Score = 28.7 bits (61), Expect = 0.85
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 85 AADQRYKGIVDAFVRIPKEQGLLSFWRGNFANV 183
A Y DAF +I K +GL +F+RG F ++
Sbjct: 225 ACSPAYNNTFDAFRKIYKYEGLAAFYRGLFPSL 257
Score = 27.5 bits (58), Expect = 2.0
Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 3/91 (3%)
Frame = +1
Query: 13 SKTAVAPIERVKLLLQVQHVSKQIAADQRYK---GIVDAFVRIPKEQGLLSFWRGNFANV 183
S VAP++ VK Q Q + G + + I +G+ +RG +
Sbjct: 19 SSLVVAPLDVVKTRKQAQKAFYSTGGGKNTMVLGGTLSSMRTIFHNEGIAGLYRGVGPMM 78
Query: 184 IRYFPTQALNFAFKDKYKQVFLGGLTRRRSS 276
+ Y P+ ++ F +K K +F G+ ++ +S
Sbjct: 79 LGYLPSWSIYFVVYEKCKVLF--GVNKKYTS 107
>SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 494
Score = 28.3 bits (60), Expect = 1.1
Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Frame = +3
Query: 216 RLQGQVQAGVPRRVDKKTQFWRYFXXXXXXXXXXXXTSLCF--VYPLDFART 365
RLQ Q A +P V + +FWR F TS+ F P DFA T
Sbjct: 7 RLQPQRFAALPNPVTAENKFWRSFKVPVVAKEYSAITSIHFSAESPYDFAVT 58
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 27.9 bits (59), Expect = 1.5
Identities = 17/41 (41%), Positives = 18/41 (43%)
Frame = -1
Query: 405 HAGHRPYRHRRRDGYVRSRGGTRSTERWLRRHHRRPDYQRS 283
H P R R RD RS +RS R HR DY RS
Sbjct: 140 HQSRSPVRSRDRD---RSSRSSRSRHPSSRSRHRYDDYSRS 177
>SPBC3E7.01 |fab1|ste12,
SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1932
Score = 27.5 bits (58), Expect = 2.0
Identities = 14/57 (24%), Positives = 26/57 (45%)
Frame = +2
Query: 446 VRRSDRSVQRFRCVRARYHHLRASYFGFYDTARGMLPDPKNTPIVISWAIAQTVTTV 616
V S +F C+ RYH L + +Y ++ M + I++ ++I T+V
Sbjct: 881 VEESYEESYKFFCIDERYHFLEKQWTLYYSHSKLMFSPFSSQRIILLYSIINKETSV 937
>SPAC823.10c |||mitochondrial carrier with solute carrier
repeats|Schizosaccharomyces pombe|chr 1|||Manual
Length = 296
Score = 27.5 bits (58), Expect = 2.0
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = +3
Query: 408 FSGLGNCISKIFKSDGLIGLYRGFGVS 488
++ + + I I+K +G+ G +RGFGV+
Sbjct: 141 YTTIYSSIRDIWKKEGISGFFRGFGVT 167
>SPAC4G9.20c |||mitochondrial carrier with solute carrier
repeats|Schizosaccharomyces pombe|chr 1|||Manual
Length = 302
Score = 26.6 bits (56), Expect = 3.4
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +3
Query: 423 NCISKIFKSDGLIGLYRGFGVSVQGI 500
+C+ KI K++GL Y+G + + GI
Sbjct: 60 DCVKKISKNEGLAAFYKGTVLPLLGI 85
Score = 26.6 bits (56), Expect = 3.4
Identities = 13/46 (28%), Positives = 20/46 (43%)
Frame = +3
Query: 342 YPLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRGF 479
YP D ++++ D + + C I+ GL G YRGF
Sbjct: 231 YPFDIVKSKIQTDGFLS--KATYKNSWQCAKGIYTKAGLRGFYRGF 274
>SPBC1703.13c |||inorganic phosphate transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 311
Score = 25.8 bits (54), Expect = 6.0
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +3
Query: 414 GLGNCISKIFKSDGLIGLYRGFGVSV 491
G G ++I+K G GL+ G GV +
Sbjct: 258 GAGAAAARIYKEIGFSGLWNGLGVRI 283
>SPCC18B5.05c |||phosphomethylpyrimidine kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 327
Score = 25.8 bits (54), Expect = 6.0
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +2
Query: 545 GMLPDPKNTPIVISWAIAQTVTTV 616
GMLPDPK+ P++ +T V
Sbjct: 89 GMLPDPKSIPVISQALTKYKITDV 112
>SPBC29A3.11c |||mitochondrial carboxylic acid
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 25.8 bits (54), Expect = 6.0
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3
Query: 408 FSGLGNCISKIFKSDGLIGLYRG 476
F + +C K++GL GLYRG
Sbjct: 50 FPTIRSCFQNAVKNEGLKGLYRG 72
>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 25.8 bits (54), Expect = 6.0
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -2
Query: 125 TKASTIPL*RWSAAICLLTCCTWSSSLTRSMGATAV 18
T+ + + + WSA I +LT C SLT S+ T +
Sbjct: 533 TEENVVYVGLWSADIIMLTYCQDGISLTHSLKLTDI 568
>SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 541
Score = 25.4 bits (53), Expect = 7.9
Identities = 22/67 (32%), Positives = 28/67 (41%), Gaps = 6/67 (8%)
Frame = +3
Query: 396 GQREFSGLGNCISKIFKSDGLIGLYR---GFGVSVQGI---IIYVPHTSVSTTRPAACCP 557
G +F G +K G IGL G G+ + G IIYV + V T R P
Sbjct: 346 GYIDFEGYPIVFAKYSFDQGEIGLSFIGIGIGIVLAGACTPIIYVHYNRVYTRRNGVMSP 405
Query: 558 TLRTHPL 578
R +PL
Sbjct: 406 EDRLYPL 412
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,533,760
Number of Sequences: 5004
Number of extensions: 47907
Number of successful extensions: 179
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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