Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0462
         (699 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   157   1e-40
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   157   1e-40

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  157 bits (380), Expect = 1e-40
 Identities = 70/85 (82%), Positives = 79/85 (92%)
 Frame = +1

Query: 10  VSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 189
           +SKT VAPIERVKLLLQVQH+SKQI+ +QRYKG++D FVRIPKEQG LS+WRGN ANVIR
Sbjct: 23  ISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWRGNLANVIR 82

Query: 190 YFPTQALNFAFKDKYKQVFLGGLTR 264
           YFPTQALNFAFKDKYKQVFLGG+ +
Sbjct: 83  YFPTQALNFAFKDKYKQVFLGGVDK 107



 Score =  134 bits (323), Expect = 1e-33
 Identities = 62/85 (72%), Positives = 68/85 (80%)
 Frame = +3

Query: 255 VDKKTQFWRYFXXXXXXXXXXXXTSLCFVYPLDFARTRLAADVGKGDGQREFSGLGNCIS 434
           VDK TQF RYF            TSLCFVYPLDFARTRLAADVGK  G+REF+GLGNC++
Sbjct: 105 VDKNTQFLRYFVGNLASGGAAGATSLCFVYPLDFARTRLAADVGKAGGEREFTGLGNCLT 164

Query: 435 KIFKSDGLIGLYRGFGVSVQGIIIY 509
           KIFK+DG+ GLYRGFGVSVQGIIIY
Sbjct: 165 KIFKADGITGLYRGFGVSVQGIIIY 189



 Score = 87.0 bits (206), Expect = 2e-19
 Identities = 37/44 (84%), Positives = 40/44 (90%)
 Frame = +2

Query: 509 RASYFGFYDTARGMLPDPKNTPIVISWAIAQTVTTVAGIISYPF 640
           RA+YFGFYDTARGMLPDPK TP +ISW IAQ VTTVAGI+SYPF
Sbjct: 190 RAAYFGFYDTARGMLPDPKKTPFLISWGIAQVVTTVAGIVSYPF 233



 Score = 27.5 bits (58), Expect = 0.13
 Identities = 11/45 (24%), Positives = 22/45 (48%)
 Frame = +3

Query: 342 YPLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRG 476
           YP D  R R+    G+   +  +    +C + I+K++G    ++G
Sbjct: 231 YPFDTVRRRMMMQSGRAKSEILYKSTLHCWATIYKTEGGNAFFKG 275



 Score = 27.5 bits (58), Expect = 0.13
 Identities = 14/53 (26%), Positives = 30/53 (56%)
 Frame = +1

Query: 31  PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 189
           P + V+  + +Q  S +  ++  YK  +  +  I K +G  +F++G F+N++R
Sbjct: 232 PFDTVRRRMMMQ--SGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILR 282



 Score = 21.4 bits (43), Expect = 8.5
 Identities = 11/46 (23%), Positives = 21/46 (45%)
 Frame = +1

Query: 91  DQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKD 228
           ++ + G+ +   +I K  G+   +RG   +V      +A  F F D
Sbjct: 153 EREFTGLGNCLTKIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYD 198


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  157 bits (380), Expect = 1e-40
 Identities = 70/85 (82%), Positives = 79/85 (92%)
 Frame = +1

Query: 10  VSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 189
           +SKT VAPIERVKLLLQVQH+SKQI+ +QRYKG++D FVRIPKEQG LS+WRGN ANVIR
Sbjct: 23  ISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWRGNLANVIR 82

Query: 190 YFPTQALNFAFKDKYKQVFLGGLTR 264
           YFPTQALNFAFKDKYKQVFLGG+ +
Sbjct: 83  YFPTQALNFAFKDKYKQVFLGGVDK 107



 Score =  134 bits (323), Expect = 1e-33
 Identities = 62/85 (72%), Positives = 68/85 (80%)
 Frame = +3

Query: 255 VDKKTQFWRYFXXXXXXXXXXXXTSLCFVYPLDFARTRLAADVGKGDGQREFSGLGNCIS 434
           VDK TQF RYF            TSLCFVYPLDFARTRLAADVGK  G+REF+GLGNC++
Sbjct: 105 VDKNTQFLRYFVGNLASGGAAGATSLCFVYPLDFARTRLAADVGKAGGEREFTGLGNCLT 164

Query: 435 KIFKSDGLIGLYRGFGVSVQGIIIY 509
           KIFK+DG+ GLYRGFGVSVQGIIIY
Sbjct: 165 KIFKADGITGLYRGFGVSVQGIIIY 189



 Score = 87.0 bits (206), Expect = 2e-19
 Identities = 37/44 (84%), Positives = 40/44 (90%)
 Frame = +2

Query: 509 RASYFGFYDTARGMLPDPKNTPIVISWAIAQTVTTVAGIISYPF 640
           RA+YFGFYDTARGMLPDPK TP +ISW IAQ VTTVAGI+SYPF
Sbjct: 190 RAAYFGFYDTARGMLPDPKKTPFLISWGIAQVVTTVAGIVSYPF 233



 Score = 27.5 bits (58), Expect = 0.13
 Identities = 11/45 (24%), Positives = 22/45 (48%)
 Frame = +3

Query: 342 YPLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRG 476
           YP D  R R+    G+   +  +    +C + I+K++G    ++G
Sbjct: 231 YPFDTVRRRMMMQSGRAKSEILYKSTLHCWATIYKTEGGNAFFKG 275



 Score = 27.5 bits (58), Expect = 0.13
 Identities = 14/53 (26%), Positives = 30/53 (56%)
 Frame = +1

Query: 31  PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 189
           P + V+  + +Q  S +  ++  YK  +  +  I K +G  +F++G F+N++R
Sbjct: 232 PFDTVRRRMMMQ--SGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILR 282



 Score = 21.4 bits (43), Expect = 8.5
 Identities = 11/46 (23%), Positives = 21/46 (45%)
 Frame = +1

Query: 91  DQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKD 228
           ++ + G+ +   +I K  G+   +RG   +V      +A  F F D
Sbjct: 153 EREFTGLGNCLTKIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYD 198


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,190
Number of Sequences: 438
Number of extensions: 3684
Number of successful extensions: 14
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)