Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0461
         (696 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    27   2.6  
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac...    26   5.9  
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon...    26   5.9  
SPBC30B4.07c |tfb4||transcription factor TFIIH complex subunit T...    26   5.9  
SPBC13G1.15c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual       25   7.8  
SPCC645.03c |isa1||iron-sulfur protein Isa1|Schizosaccharomyces ...    25   7.8  

>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1142

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -2

Query: 665 E*RYWVKLVGVSLSPSVIPPYLRHCGKSNPSGIALRFFI 549
           E +Y V +    LS   I P++   GK +   + L FF+
Sbjct: 673 ETKYHVNMSNTELSVHGISPFMEFFGKESEKSLTLEFFL 711


>SPCP31B10.07 |eft202||translation elongation factor 2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 842

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 276 GGTVIPAARQEGFEISTLTSTMITFPIF 193
           GG +IP AR+  +  + L S +I  P+F
Sbjct: 702 GGQIIPTARRVVYASTLLASPIIQEPVF 729


>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
           elongation factor 2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 276 GGTVIPAARQEGFEISTLTSTMITFPIF 193
           GG +IP AR+  +  + L S +I  P+F
Sbjct: 702 GGQIIPTARRVVYASTLLASPIIQEPVF 729


>SPBC30B4.07c |tfb4||transcription factor TFIIH complex subunit Tfb4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = -2

Query: 173 ISRKP*ISEKIVKSFLYINKLQNRWTI 93
           +SRK  IS  + ++  YIN++QN+ T+
Sbjct: 128 VSRKTMISGALSRALAYINQVQNKNTL 154


>SPBC13G1.15c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 111

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -2

Query: 341 NTYSESRLSEMTYLGRRRLLSTAALLYRR 255
           N Y  S ++   Y+  RRLL     LYRR
Sbjct: 21  NKYKLSEITFKVYISIRRLLIVVITLYRR 49


>SPCC645.03c |isa1||iron-sulfur protein Isa1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 190

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 17/61 (27%), Positives = 22/61 (36%)
 Frame = +2

Query: 131 NFLRFFRKFTVYEIXXXXXXXXXXXXXXXXXXXXXSKPSCRAAGITVPPWITVDVFLSTS 310
           N L+F RK ++ EI                      KPS   +G T P  +T     ST 
Sbjct: 16  NRLQFLRKLSLQEIQTLKTQHQYLGRTRLDVETPSLKPSAAGSGSTAPKPVTEREIASTR 75

Query: 311 F 313
           F
Sbjct: 76  F 76


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,040,351
Number of Sequences: 5004
Number of extensions: 65845
Number of successful extensions: 148
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)