Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0461
         (696 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74031-9|CAA98459.1|  101|Caenorhabditis elegans Hypothetical pr...    28   5.5  
U00046-6|AAN65305.1|  422|Caenorhabditis elegans Mammalian zak k...    28   5.5  
U00046-5|AAC47047.4|  516|Caenorhabditis elegans Mammalian zak k...    28   5.5  
AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin relat...    28   5.5  
Z29116-5|CAA82373.1| 1295|Caenorhabditis elegans Hypothetical pr...    28   7.3  
Z19555-7|CAA79620.1| 1295|Caenorhabditis elegans Hypothetical pr...    28   7.3  
U58740-1|AAB00611.1| 1073|Caenorhabditis elegans Hypothetical pr...    28   7.3  
M25580-1|AAA28058.1| 1295|Caenorhabditis elegans protein ( C.ele...    28   7.3  
Z77134-2|CAB00873.1|  877|Caenorhabditis elegans Hypothetical pr...    27   9.7  

>Z74031-9|CAA98459.1|  101|Caenorhabditis elegans Hypothetical
           protein F32D8.9 protein.
          Length = 101

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -3

Query: 262 TGGTTRGF*NINFDVYYDNFSHFSENFKKKYLVN 161
           T  T RG  N NF+++Y NF+  + N   +  +N
Sbjct: 64  TRETCRGSLNTNFNIFYSNFTGQANNSPTQMCIN 97


>U00046-6|AAN65305.1|  422|Caenorhabditis elegans Mammalian zak
           kinase homolog protein1, isoform b protein.
          Length = 422

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
 Frame = +2

Query: 236 SKPSCR-AAGITV-PPWITVDVFLSTSFR-IVSIHYRCF*VPQAQVTEI 373
           ++P+C  ++G+T  P WITVD       R IVS++Y    V Q + TE+
Sbjct: 213 NEPACSISSGMTTNPDWITVDTEDDVKIRVIVSVYYADI-VTQPRNTEV 260


>U00046-5|AAC47047.4|  516|Caenorhabditis elegans Mammalian zak
           kinase homolog protein1, isoform a protein.
          Length = 516

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
 Frame = +2

Query: 236 SKPSCR-AAGITV-PPWITVDVFLSTSFR-IVSIHYRCF*VPQAQVTEI 373
           ++P+C  ++G+T  P WITVD       R IVS++Y    V Q + TE+
Sbjct: 307 NEPACSISSGMTTNPDWITVDTEDDVKIRVIVSVYYADI-VTQPRNTEV 354


>AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin related.
            see also lmb-protein 1 protein.
          Length = 1067

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 569  CRKGYSSRSAGDKAESHWG 625
            C+ GY     G+ A++HWG
Sbjct: 974  CKSGYQGERCGECAQNHWG 992


>Z29116-5|CAA82373.1| 1295|Caenorhabditis elegans Hypothetical protein
            F02A9.6 protein.
          Length = 1295

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 524  RSR*K*KEEEDGSTPLLGKWKMGCDSVL 441
            RS  K K++EDG TP++   K GC+  +
Sbjct: 1097 RSSNKDKQDEDGRTPIMLAAKEGCEKTV 1124


>Z19555-7|CAA79620.1| 1295|Caenorhabditis elegans Hypothetical protein
            F02A9.6 protein.
          Length = 1295

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 524  RSR*K*KEEEDGSTPLLGKWKMGCDSVL 441
            RS  K K++EDG TP++   K GC+  +
Sbjct: 1097 RSSNKDKQDEDGRTPIMLAAKEGCEKTV 1124


>U58740-1|AAB00611.1| 1073|Caenorhabditis elegans Hypothetical
           protein R09H3.1 protein.
          Length = 1073

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 211 DNFSHFSENFKKKYLVNREFPKKS 140
           +NF  F ENFK+  L NR F  ++
Sbjct: 291 ENFEFFHENFKENVLNNRNFSSQT 314


>M25580-1|AAA28058.1| 1295|Caenorhabditis elegans protein ( C.elegans
            glp-1 gene,complete cds. ).
          Length = 1295

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 524  RSR*K*KEEEDGSTPLLGKWKMGCDSVL 441
            RS  K K++EDG TP++   K GC+  +
Sbjct: 1097 RSSNKDKQDEDGRTPIMLAAKEGCEKTV 1124


>Z77134-2|CAB00873.1|  877|Caenorhabditis elegans Hypothetical
           protein R09H10.4 protein.
          Length = 877

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/39 (30%), Positives = 24/39 (61%)
 Frame = +2

Query: 260 GITVPPWITVDVFLSTSFRIVSIHYRCF*VPQAQVTEIT 376
           G+T+ P+I V   + T+F I++I+Y    + Q  V +++
Sbjct: 255 GLTIFPFIGVGFIIMTTFSIITIYYSSSRLDQWSVHKVS 293


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,675,947
Number of Sequences: 27780
Number of extensions: 363233
Number of successful extensions: 778
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 778
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)