Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0461
         (696 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee preprosec...    23   2.1  
AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.      23   2.1  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   2.8  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      23   2.8  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   6.4  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   6.4  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             22   6.4  

>M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee
           preprosecapin mRNA, complete cds. ).
          Length = 77

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
 Frame = +2

Query: 485 STHLL--LLFIFNVILSALPLEC 547
           +THL+  LLF F VIL  +P +C
Sbjct: 8   ATHLITVLLFSFVVILLIIPSKC 30


>AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.
          Length = 77

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
 Frame = +2

Query: 485 STHLL--LLFIFNVILSALPLEC 547
           +THL+  LLF F VIL  +P +C
Sbjct: 8   ATHLITVLLFSFVVILLIIPSKC 30


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +1

Query: 295 LPKYVISDSLDSL*VFLGTTSTG-HRNYIDFLHKKKRI 405
           L K V+  +L ++    G +  G H   +DFLHK+K+I
Sbjct: 2   LSKVVLLVALAAICGAQGASYAGRHTADMDFLHKQKKI 39


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +1

Query: 295 LPKYVISDSLDSL*VFLGTTSTG-HRNYIDFLHKKKRI 405
           L K V+  +L ++    G +  G H   +DFLHK+K+I
Sbjct: 2   LSKVVLLVALAAICGAQGASYAGRHTADMDFLHKQKKI 39


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = -2

Query: 497 EDGSTPLLGKWKMGCDSVLCHFP 429
           E    P +G W+M C  V C  P
Sbjct: 375 EPSKNPAMGHWQMSC--VACSPP 395


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = +1

Query: 367 RNYIDFLHKKKRILVCTMEPNGK*HKTESHP 459
           R++ID++H K +  +     NG     E  P
Sbjct: 196 RSFIDYVHPKDKATLADQIKNGIVSPQEERP 226


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = +1

Query: 367 RNYIDFLHKKKRILVCTMEPNGK*HKTESHP 459
           R++ID++H K +  +     NG     E  P
Sbjct: 191 RSFIDYVHPKDKATLADQIKNGIVSPQEERP 221


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,690
Number of Sequences: 438
Number of extensions: 4842
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)