Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0461
         (696 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g48380.1 68414.m05404 root hair initiation protein root hairl...    31   0.96 
At4g15060.1 68417.m02314 F-box protein-related contains weak sim...    30   1.3  
At2g26080.1 68415.m03131 glycine dehydrogenase [decarboxylating]...    28   6.8  
At5g11290.1 68418.m01318 expressed protein contains Pfam profile...    27   9.0  
At1g62330.1 68414.m07033 expressed protein contains Pfam PF03138...    27   9.0  

>At1g48380.1 68414.m05404 root hair initiation protein root hairless
           1 (RHL1)
          Length = 355

 Score = 30.7 bits (66), Expect = 0.96
 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
 Frame = -3

Query: 382 SQCNFGDLCLWYLKTPIVNRDYPK*RT*E-DVDCYPRRHCYTGGTTRGF*NINFDVYYDN 206
           S    GDL     K P++  ++P+ R        YP+    T   +RG  N+  D Y+DN
Sbjct: 85  SAATIGDLDRLSTKNPVLYLNFPQGRMKLFGTILYPKNRYLTLQFSRGGKNVLCDDYFDN 144

Query: 205 FSHFSENF 182
              FSE++
Sbjct: 145 MIVFSESW 152


>At4g15060.1 68417.m02314 F-box protein-related contains weak
           similarity to F-box domain Pfam:PF00646
          Length = 572

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +1

Query: 304 YVISDSLDSL*VFLGTTSTGHRNYIDFLHK-KKRILV 411
           YV+  S+ SL  F  T   G +N ID+L K KKR+L+
Sbjct: 529 YVVQSSIPSLERFTWTWIYGSQNEIDYLEKLKKRLLL 565


>At2g26080.1 68415.m03131 glycine dehydrogenase [decarboxylating],
           putative / glycine decarboxylase, putative / glycine
           cleavage system P-protein, putative strong similarity to
           SP|P26969 Glycine dehydrogenase [decarboxylating],
           mitochondrial precursor (EC 1.4.4.2) {Pisum sativum};
           contains Pfam profile PF02347: Glycine cleavage system
           P-protein
          Length = 1044

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
 Frame = +1

Query: 127 RKLFTIFSEIHGLRDIFF*SFRKNGKSYHSRRQS*YFKTLLSC---RRYNSAAVDNSRRL 297
           R + ++ S +H  RD+   +F  +G++ H  R         S    RR+NSA  D   ++
Sbjct: 40  RYVSSVSSFLHRRRDVSGSAFTTSGRNQHQTRSISVDALKPSDTFPRRHNSATPDEQAQM 99

Query: 298 PKYVISDSLDSL 333
             Y   D+L++L
Sbjct: 100 ANYCGFDNLNTL 111


>At5g11290.1 68418.m01318 expressed protein contains Pfam profile
           PF03140: Plant protein of unknown function
          Length = 353

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +2

Query: 380 TFYTKKKEFWFALWNRTGSDIKPN--HTPFSTSRVVGSTHLLLLFIFNVILSALPL 541
           T Y   +    A WN+  + ++ +  H P+S + VV +  LLLL     I S L L
Sbjct: 298 TVYGNLQAHCNAPWNKWKATLRRDYFHNPWSAASVVAACVLLLLTFVQAICSILAL 353


>At1g62330.1 68414.m07033 expressed protein contains Pfam PF03138:
           Plant protein family. The function of this family of
           plant proteins is unknown;
          Length = 672

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -3

Query: 514 ENKKKKKMGRPHYSGSGKWGVIRFY 440
           E+K+KKKMG+P  + +G +G +  Y
Sbjct: 174 EHKEKKKMGKPKKTYNGTYGRLLAY 198


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,527,246
Number of Sequences: 28952
Number of extensions: 329129
Number of successful extensions: 726
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 726
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)