Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0459
         (696 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...   130   2e-31
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce...    26   4.5  
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    26   5.9  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score =  130 bits (313), Expect = 2e-31
 Identities = 72/141 (51%), Positives = 88/141 (62%), Gaps = 1/141 (0%)
 Frame = -2

Query: 677 TVGIDMDPRAYFTSAPIIMAVPTGIKIFR*LATIPWNS-N*LYP*YFMKIRFGIFIHIGG 501
           TVG+D+D RAYF++A +++A+PTGIKIF  LAT+   +           I F I   IGG
Sbjct: 300 TVGLDVDTRAYFSAATMVIAIPTGIKIFSWLATLTGGAIQWSRVPMLYAIGFLILFTIGG 359

Query: 500 LTGVILANSSMDITLHDTYYVVAHFHYVLSXXXXXXXXXXXIN*YPLXTGLSLNSYILKI 321
           LTGVIL+NS +DI  HDTY+VVAHFHYVLS               P   GL  N  +  I
Sbjct: 360 LTGVILSNSVLDIAFHDTYFVVAHFHYVLSMGALFGLCGAYY-WSPKMFGLMYNETLASI 418

Query: 320 QFFTIFIGVNITFFPQHFLGL 258
           QF+ +FIGVNI F PQHFLGL
Sbjct: 419 QFWILFIGVNIVFGPQHFLGL 439


>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 747

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = +2

Query: 164 TDNREIYEPNEEIIFHEIYESG*SEYRRGIQLNLKNVVEKMLYLLQ 301
           T NRE+ E NEEI+   +     S   R  +L+L+N +  +L  L+
Sbjct: 452 TTNREVEEENEEILL-VLLNIISSVIGRNAELDLENPISSLLPALE 496


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1517

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +1

Query: 502 PPM*IKIPNLIFIKY*GYN*FEFHGIVASHLKIL 603
           PP+  ++P+L +I++      E HG+V SH  IL
Sbjct: 317 PPL--QVPDLAYIEFSRSPIGELHGVVISHRTIL 348


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,383,880
Number of Sequences: 5004
Number of extensions: 42073
Number of successful extensions: 80
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)