Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0459
         (696 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10)                  140   1e-33
SB_20687| Best HMM Match : No HMM Matches (HMM E-Value=.)              51   1e-06
SB_57614| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_50221| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_39830| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_15102| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_3498| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.7  
SB_28305| Best HMM Match : MMR_HSR1 (HMM E-Value=0.0054)               28   8.3  
SB_13289| Best HMM Match : DUF543 (HMM E-Value=10)                     28   8.3  
SB_42512| Best HMM Match : Cupin_4 (HMM E-Value=0.037)                 28   8.3  
SB_1091| Best HMM Match : Cupin_4 (HMM E-Value=0)                      28   8.3  

>SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10)
          Length = 229

 Score =  140 bits (339), Expect = 1e-33
 Identities = 74/140 (52%), Positives = 90/140 (64%)
 Frame = -2

Query: 668 IDMDPRAYFTSAPIIMAVPTGIKIFR*LATIPWNSN*LYP*YFMKIRFGIFIHIGGLTGV 489
           +++D RAYFT+A +I+AVPTGIK+F  LAT+   +  L       I F     IGGLTGV
Sbjct: 1   MNVDTRAYFTAATMIIAVPTGIKVFSWLATLYGGAIRLDTPMLWAIGFVFLFTIGGLTGV 60

Query: 488 ILANSSMDITLHDTYYVVAHFHYVLSXXXXXXXXXXXIN*YPLXTGLSLNSYILKIQFFT 309
           ILANSS+D+ +HDTYYVVAHFHYVLS              +   TG   N    KI F+ 
Sbjct: 61  ILANSSLDVVMHDTYYVVAHFHYVLSMGAVFAIFAGFYFWFGKITGYCYNELYGKIHFWI 120

Query: 308 IFIGVNITFFPQHFLGLAEY 249
           +FIGVNITFFPQHFLGLA +
Sbjct: 121 MFIGVNITFFPQHFLGLAGF 140



 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -1

Query: 87  SIE*YQNLPPAEHSYNELPIL 25
           S+E  Q  PPA H+YNELP +
Sbjct: 199 SLEWVQQSPPALHTYNELPFV 219


>SB_20687| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 143

 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 23/36 (63%), Positives = 26/36 (72%)
 Frame = -2

Query: 356 TGLSLNSYILKIQFFTIFIGVNITFFPQHFLGLAEY 249
           TG   N    KI F+ +FIGVNITFFPQHFLGLA +
Sbjct: 19  TGYCYNELYGKIHFWIMFIGVNITFFPQHFLGLAGF 54



 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -1

Query: 87  SIE*YQNLPPAEHSYNELPIL 25
           S+E  Q  PPA H+YNELP +
Sbjct: 113 SLEWVQQSPPALHTYNELPFV 133


>SB_57614| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -1

Query: 87  SIE*YQNLPPAEHSYNELPIL 25
           S+E  Q  PPA H+YNELP +
Sbjct: 67  SLEWVQQSPPALHTYNELPFV 87


>SB_50221| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -1

Query: 87  SIE*YQNLPPAEHSYNELPIL 25
           S+E  Q  PPA H+YNELP +
Sbjct: 67  SLEWVQQSPPALHTYNELPFV 87


>SB_39830| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -1

Query: 87  SIE*YQNLPPAEHSYNELPIL 25
           S+E  Q  PPA H+YNELP +
Sbjct: 67  SLEWVQQSPPALHTYNELPFV 87


>SB_15102| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -1

Query: 87  SIE*YQNLPPAEHSYNELPIL 25
           S+E  Q  PPA H+YNELP +
Sbjct: 67  SLEWVQQSPPALHTYNELPFV 87


>SB_3498| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -1

Query: 87  SIE*YQNLPPAEHSYNELPIL 25
           S+E  Q  PPA H+YNELP +
Sbjct: 67  SLEWVQQSPPALHTYNELPFV 87


>SB_28305| Best HMM Match : MMR_HSR1 (HMM E-Value=0.0054)
          Length = 425

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 690 HHIIHGRYRYGSTSIFYFSSY 628
           H+ +H +Y  G  S FYF+SY
Sbjct: 47  HNHLHSQYTSGVNSYFYFASY 67


>SB_13289| Best HMM Match : DUF543 (HMM E-Value=10)
          Length = 319

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -2

Query: 98  ISHHQLNDIKIYHQQNIHIMNYQF 27
           I+HHQ + I I H Q+  I+NY +
Sbjct: 296 INHHQSSSIIINHHQSSSIINYYY 319


>SB_42512| Best HMM Match : Cupin_4 (HMM E-Value=0.037)
          Length = 204

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -2

Query: 320 QFFTIFIGVNITFFPQHFLGLAEYLDDIQI 231
           +FF   +G N+   P +  GLA + DD+++
Sbjct: 162 RFFGCLVGANVYITPPNAQGLAPHHDDVEV 191


>SB_1091| Best HMM Match : Cupin_4 (HMM E-Value=0)
          Length = 584

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -2

Query: 320 QFFTIFIGVNITFFPQHFLGLAEYLDDIQI 231
           +FF   +G N+   P +  GLA + DD+++
Sbjct: 162 RFFGCLVGANVYITPPNAQGLAPHHDDVEV 191


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,020,863
Number of Sequences: 59808
Number of extensions: 262834
Number of successful extensions: 404
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 402
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)