Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0459
         (696 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    23   3.7  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    23   3.7  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   8.5  

>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -1

Query: 672 RYRYGSTSIFYFSSYNYGCTNGN*NF*MTSYNTMELKLI 556
           R R   T I   ++YNY   N N N     YN + ++ I
Sbjct: 295 RERSKETKIISSNNYNYKNYNNNYNSKKLYYNIINIEQI 333



 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 588 SSKNFNSRWYSHNYRS 635
           SS N+N + Y++NY S
Sbjct: 305 SSNNYNYKNYNNNYNS 320


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -1

Query: 672 RYRYGSTSIFYFSSYNYGCTNGN*NF*MTSYNTMELKLI 556
           R R   T I   ++YNY   N N N     YN + ++ I
Sbjct: 306 RERSKETKIISSNNYNYKNYNNNYNSKKLYYNIINIEQI 344



 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 588 SSKNFNSRWYSHNYRS 635
           SS N+N + Y++NY S
Sbjct: 316 SSNNYNYKNYNNNYNS 331


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = -2

Query: 95  SHHQLNDIKIYHQQNIHIM 39
           SHH L+  ++ +QQ+ ++M
Sbjct: 72  SHHHLHHHQVLYQQSPYLM 90


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,959
Number of Sequences: 438
Number of extensions: 3656
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)