Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0458
         (575 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac...   122   4e-29
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon...   122   4e-29
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce...    86   3e-18
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma...    70   2e-13
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz...    27   2.6  
SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit 1|Schizosacchar...    25   6.0  
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr...    25   7.9  
SPAC3C7.09 |set8||lysine methyltransferase Set8 |Schizosaccharom...    25   7.9  

>SPCP31B10.07 |eft202||translation elongation factor 2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 842

 Score =  122 bits (294), Expect = 4e-29
 Identities = 53/81 (65%), Positives = 62/81 (76%)
 Frame = +1

Query: 13  VLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLP 192
           VLN++RGHVF E Q  GTP++ +KAYLPVNESFGFT +LR  T GQAFPQ VFDHW  + 
Sbjct: 746 VLNKKRGHVFSEEQRVGTPLYNIKAYLPVNESFGFTGELRQATAGQAFPQLVFDHWSPMS 805

Query: 193 GDPCEPQSKPYNVVQETRKRK 255
           GDP +P SKP  +V E RKRK
Sbjct: 806 GDPLDPTSKPGQIVCEARKRK 826


>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
           elongation factor 2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score =  122 bits (294), Expect = 4e-29
 Identities = 53/81 (65%), Positives = 62/81 (76%)
 Frame = +1

Query: 13  VLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLP 192
           VLN++RGHVF E Q  GTP++ +KAYLPVNESFGFT +LR  T GQAFPQ VFDHW  + 
Sbjct: 746 VLNKKRGHVFSEEQRVGTPLYNIKAYLPVNESFGFTGELRQATAGQAFPQLVFDHWSPMS 805

Query: 193 GDPCEPQSKPYNVVQETRKRK 255
           GDP +P SKP  +V E RKRK
Sbjct: 806 GDPLDPTSKPGQIVCEARKRK 826


>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 983

 Score = 86.2 bits (204), Expect = 3e-18
 Identities = 37/70 (52%), Positives = 50/70 (71%)
 Frame = +1

Query: 13   VLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLP 192
            +L RRRGHV ++    G+P+++V+A +PV +S GF  DLR +T GQA  Q VFDHWQV+P
Sbjct: 862  LLTRRRGHVLQDIPRPGSPLYLVRALIPVIDSCGFETDLRVHTQGQAMCQMVFDHWQVVP 921

Query: 193  GDPCEPQSKP 222
            GDP +   KP
Sbjct: 922  GDPLDKSIKP 931


>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1000

 Score = 70.1 bits (164), Expect = 2e-13
 Identities = 30/64 (46%), Positives = 43/64 (67%)
 Frame = +1

Query: 10   GVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVL 189
            GV+++RRG V +E    GTP FIVKA +PV ESFGF  ++   T G A+PQ +F  +++L
Sbjct: 883  GVVSKRRGRVIDEEMKEGTPFFIVKALIPVVESFGFAVEILKRTSGAAYPQLIFHGFEML 942

Query: 190  PGDP 201
              +P
Sbjct: 943  DENP 946


>SPBC1306.01c ||SPBC409.22c|translation elongation factor
           G|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 770

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 12/47 (25%), Positives = 27/47 (57%)
 Frame = +1

Query: 10  GVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQ 150
           G L++R+  + +         F ++A +P+N  F +++D+R+ T G+
Sbjct: 695 GNLDKRKATIVDSD--TDEDEFTLQAEVPLNSMFSYSSDIRALTKGK 739


>SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 232

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +1

Query: 175 HWQVLPGDPCEPQSKPYNVVQETRKRK 255
           H+Q L GDP    + PY  VQ    RK
Sbjct: 78  HFQNLSGDPVSQMATPYPPVQIELMRK 104


>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 697

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 11/48 (22%), Positives = 23/48 (47%)
 Frame = +2

Query: 161 SAYSTIGRSSLETRANLRASPTTLYRKRERGRIEGRSPRLNSIFGQIV 304
           + Y  +    L  +A LRA P+    + E+ ++     +  SIF +++
Sbjct: 639 NGYKRVLLDRLRKKAILRAFPSRTLNRTEKVKLYNEDAKFRSIFSRVL 686


>SPAC3C7.09 |set8||lysine methyltransferase Set8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 429

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 116 LLPICVPTPADRPSRSAYSTIGRS 187
           +LP+ + TPA  P +  YS  G S
Sbjct: 109 VLPLSINTPAQWPEKEVYSLQGTS 132


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,279,363
Number of Sequences: 5004
Number of extensions: 46641
Number of successful extensions: 99
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)