Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0458
(575 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0017 + 18937774-18937864,18938505-18940945 117 8e-27
04_01_0103 + 1082077-1082167,1083037-1085477 114 4e-26
01_06_0662 + 30987187-30987277,30987825-30990214 100 9e-22
01_06_0548 - 30137139-30139196,30139279-30139691,30139822-30139912 95 4e-20
06_03_0715 - 23823427-23823525,23823616-23823822,23823907-238240... 89 2e-18
03_05_0511 + 25056018-25059107 67 1e-11
02_04_0148 - 20198407-20201424 54 6e-08
11_06_0768 + 27129007-27129038,27129140-27129220,27129723-271300... 34 0.071
01_04_0109 + 16112581-16112934 33 0.12
03_05_0044 + 20203644-20204054,20204695-20204916,20205092-202051... 31 0.87
06_01_0673 - 4908496-4908563,4908646-4908712,4908821-4908922,490... 30 1.5
09_06_0142 - 21107878-21109104 28 4.6
07_03_1090 + 23891294-23892222,23892317-23892516,23895241-238954... 28 6.1
06_03_0403 - 20435349-20435358,20435750-20436204,20436744-20438315 28 6.1
04_04_1608 - 34753321-34753332,34753434-34753628,34753868-347539... 28 6.1
01_01_0425 + 3221303-3222602,3222710-3222928,3223010-3223114,322... 28 6.1
11_02_0010 + 7322826-7323658,7324236-7324714,7325204-7326195 27 8.1
01_06_0456 + 29521282-29522064 27 8.1
01_01_0267 + 2201404-2202501 27 8.1
>02_04_0017 + 18937774-18937864,18938505-18940945
Length = 843
Score = 117 bits (281), Expect = 8e-27
Identities = 51/82 (62%), Positives = 64/82 (78%)
Frame = +1
Query: 10 GVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVL 189
GVLN++RGHVFEE Q GTP++ +KAYLPV ESFGF++ LR+ T GQAFPQCVFDHW ++
Sbjct: 746 GVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSSQLRAATSGQAFPQCVFDHWDMM 805
Query: 190 PGDPCEPQSKPYNVVQETRKRK 255
DP E S+ +VQ+ RKRK
Sbjct: 806 TSDPLEAGSQASTLVQDIRKRK 827
>04_01_0103 + 1082077-1082167,1083037-1085477
Length = 843
Score = 114 bits (275), Expect = 4e-26
Identities = 50/82 (60%), Positives = 63/82 (76%)
Frame = +1
Query: 10 GVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVL 189
GVLN++RGHVFEE Q GTP++ +KAYLPV ESFGF++ LR+ T GQAFPQCVFDHW ++
Sbjct: 746 GVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSSQLRAATSGQAFPQCVFDHWDMM 805
Query: 190 PGDPCEPQSKPYNVVQETRKRK 255
DP E S+ +V + RKRK
Sbjct: 806 TSDPLEVSSQANQLVLDIRKRK 827
>01_06_0662 + 30987187-30987277,30987825-30990214
Length = 826
Score = 100 bits (239), Expect = 9e-22
Identities = 44/69 (63%), Positives = 55/69 (79%)
Frame = +1
Query: 13 VLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLP 192
VLN++RGHVFEE Q GTP++ +KAYLPV ESFGFT+ LR+ T GQAFP VFDHW++L
Sbjct: 745 VLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFTSTLRAATSGQAFPLFVFDHWEMLS 804
Query: 193 GDPCEPQSK 219
DP EP ++
Sbjct: 805 VDPLEPGTR 813
>01_06_0548 - 30137139-30139196,30139279-30139691,30139822-30139912
Length = 853
Score = 95.1 bits (226), Expect = 4e-20
Identities = 42/82 (51%), Positives = 55/82 (67%)
Frame = +1
Query: 10 GVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVL 189
GVLN R G + EES+ GTP+ ++ YLPV +SF FT LR+ T GQAFPQC+F HWQ +
Sbjct: 756 GVLNSRNGELVEESERTGTPLSNLRFYLPVAKSFDFTEKLRAETSGQAFPQCIFHHWQTM 815
Query: 190 PGDPCEPQSKPYNVVQETRKRK 255
DP + S+ V+ + RKRK
Sbjct: 816 RSDPFQEGSEAAKVITDIRKRK 837
>06_03_0715 - 23823427-23823525,23823616-23823822,23823907-23824017,
23824124-23824322,23824410-23824495,23824940-23825098,
23825204-23825302,23825385-23826578,23826666-23826734,
23828042-23828812
Length = 997
Score = 89.0 bits (211), Expect = 2e-18
Identities = 39/65 (60%), Positives = 49/65 (75%)
Frame = +1
Query: 13 VLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLP 192
VL+RRRGHV + GTP+++VKA+LPV ESFGF DLR +T GQAF VFDHW ++P
Sbjct: 873 VLSRRRGHVTADVPKPGTPIYVVKAFLPVIESFGFETDLRYHTQGQAFCLSVFDHWAIVP 932
Query: 193 GDPCE 207
GDP +
Sbjct: 933 GDPLD 937
>03_05_0511 + 25056018-25059107
Length = 1029
Score = 66.9 bits (156), Expect = 1e-11
Identities = 31/63 (49%), Positives = 39/63 (61%)
Frame = +1
Query: 13 VLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLP 192
VL+R+R V +E GT +F V AYLPV ES GF+ +LRS T G A V HW+ +P
Sbjct: 910 VLSRKRARVLKEEMQEGTSLFTVHAYLPVAESVGFSNELRSVTAGAASALLVLSHWEAIP 969
Query: 193 GDP 201
DP
Sbjct: 970 EDP 972
>02_04_0148 - 20198407-20201424
Length = 1005
Score = 54.4 bits (125), Expect = 6e-08
Identities = 27/63 (42%), Positives = 33/63 (52%)
Frame = +1
Query: 13 VLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLP 192
VL R V +E GT +F V AYL V ES F+ LR+ T G A F HW+ +P
Sbjct: 886 VLGNCRARVLKEEMQEGTSLFTVHAYLSVAESSEFSKKLRNATAGAASALLAFSHWETVP 945
Query: 193 GDP 201
DP
Sbjct: 946 QDP 948
>11_06_0768 +
27129007-27129038,27129140-27129220,27129723-27130089,
27130165-27130255,27130515-27130595,27130764-27131830,
27132060-27132071,27132465-27133209,27133210-27135244,
27135712-27135787,27135925-27136029,27137080-27137166
Length = 1592
Score = 34.3 bits (75), Expect = 0.071
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = +2
Query: 104 SRSVLLPICVPTPADRPSRSAYSTIGRSSLETRANLRASPTTLYRKRERG 253
S S +P +P P D PS+ +T G S+ +N SP+ +Y K G
Sbjct: 19 STSARVPGVIPKPIDLPSQRGTATQGDKSMPPASNAWGSPSVMYPKNGGG 68
>01_04_0109 + 16112581-16112934
Length = 117
Score = 33.5 bits (73), Expect = 0.12
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Frame = +2
Query: 101 MSRSVLLP--ICVPTPADRPSRSAYSTIGRSSLETRANLRASPTTLYRKRERGR 256
M+ VL P + +P+PA R R+ +T R++ +++ R PTT +R +GR
Sbjct: 1 MATEVLRPHNVLLPSPAQRRIRATAATHQRTANNHQSDARTKPTTAGSRRRQGR 54
>03_05_0044 +
20203644-20204054,20204695-20204916,20205092-20205130,
20206275-20206396,20206489-20206639,20207892-20207963,
20208256-20208351,20208861-20208949,20209068-20209134,
20210197-20210235,20210369-20210429,20210572-20210681,
20210766-20210840,20210914-20210982,20213126-20213247,
20214682-20214807,20214897-20215017,20215133-20215233,
20215564-20215624,20216560-20216613,20217585-20217689
Length = 770
Score = 30.7 bits (66), Expect = 0.87
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +1
Query: 10 GVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQ 150
G +N+R+G + Q +V ++P+N FG++ LRS T G+
Sbjct: 694 GDMNKRKGIIVGNDQEGDDT--VVVCHVPLNNMFGYSTALRSMTQGK 738
>06_01_0673 -
4908496-4908563,4908646-4908712,4908821-4908922,
4909006-4909119,4909510-4909683,4909769-4910200,
4910855-4911295
Length = 465
Score = 29.9 bits (64), Expect = 1.5
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = +2
Query: 107 RSVLLPICVPTPADRPSRSAYSTIGRSSLETRANLRASPTTLYRKRE-RGRIEGRSPRLN 283
+S+LLP A P R GR+S+ RA+ A+ R+ + R R+ L
Sbjct: 2 QSLLLPTFAAASAAPPRRGRVPPAGRASVSVRASASAAAVAPRRETDPRKRVVITGMGLV 61
Query: 284 SIFGQIVN 307
S+FG V+
Sbjct: 62 SVFGNDVD 69
>09_06_0142 - 21107878-21109104
Length = 408
Score = 28.3 bits (60), Expect = 4.6
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = -3
Query: 225 VGLALRFARVSREDLPMVEYALREGLS-AGVGTQIGSKTER 106
V L L++ E LP++ A REG++ AGV +GS R
Sbjct: 171 VDLGLKYGANPDEVLPLLRAAQREGVAVAGVSFHVGSGASR 211
>07_03_1090 +
23891294-23892222,23892317-23892516,23895241-23895482,
23895771-23896461,23896486-23896562
Length = 712
Score = 27.9 bits (59), Expect = 6.1
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -3
Query: 273 GDLPSILPLSRFLYNVVGLALRFARV 196
GDL I P RFL +V+G+ F RV
Sbjct: 408 GDLSKIDPAERFLKDVLGVPFAFERV 433
>06_03_0403 - 20435349-20435358,20435750-20436204,20436744-20438315
Length = 678
Score = 27.9 bits (59), Expect = 6.1
Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 3/82 (3%)
Frame = +2
Query: 23 DVVVTFSKSPRWQVHLCSL*RPTYLSMSRSVLLPICVPTPADRPSRSAYSTIGRSS---L 193
++V+T S S V + S+ P + + + P+C+ TPAD A GR+ L
Sbjct: 44 ELVLTPSSSSFADVLVSSIRNPMFFN--NATARPLCIVTPADASHVQAAVLCGRAEGVRL 101
Query: 194 ETRANLRASPTTLYRKRERGRI 259
R+ YR RG +
Sbjct: 102 RARSGGHDYEGLSYRSARRGEV 123
>04_04_1608 -
34753321-34753332,34753434-34753628,34753868-34753972,
34754176-34754219,34754645-34754700,34755986-34756146
Length = 190
Score = 27.9 bits (59), Expect = 6.1
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -3
Query: 468 IVWFIIYLVECDIFSCCLTCASAL 397
+ WFI + +F C LTC+ A+
Sbjct: 52 VPWFIYTFIGLGVFMCLLTCSGAI 75
>01_01_0425 + 3221303-3222602,3222710-3222928,3223010-3223114,
3223274-3223403,3223524-3224464,3224971-3225257
Length = 993
Score = 27.9 bits (59), Expect = 6.1
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +2
Query: 167 YSTIGRSSLETRANLRASPTTLYRKRERGRIEGRSPRLNSIFGQI 301
YS I + + + ASP T R+++R E RS R+NS+ +I
Sbjct: 884 YSGIEAARSPSSSRDSASPRTRTRQKQRRTGEQRSSRINSLLQRI 928
>11_02_0010 + 7322826-7323658,7324236-7324714,7325204-7326195
Length = 767
Score = 27.5 bits (58), Expect = 8.1
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = +2
Query: 272 PRLNSIFGQIVNYIVKAN*KNVSIRKXLHACLFSTTHVPHHIKA 403
PR + +++NYIV + K+ + S +PHH+K+
Sbjct: 389 PRTREEWERVLNYIVSTSEKDNDLEVMNKILFMSYNDLPHHMKS 432
>01_06_0456 + 29521282-29522064
Length = 260
Score = 27.5 bits (58), Expect = 8.1
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = -2
Query: 229 RCRACSEVRTGLQGGPANGRIRTAGRPVRRCWNANR 122
R C +G +GG R R AG RRC A+R
Sbjct: 11 RAWRCYSPASGARGGSRRRRRRPAGTTSRRCSRADR 46
>01_01_0267 + 2201404-2202501
Length = 365
Score = 27.5 bits (58), Expect = 8.1
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +2
Query: 155 SRSAYSTIGRSSLETRANLRASPTTLYRKRERGRIEGRSPRLNSIFG 295
SRSAY ++ + N A+ TT ER G PR+ +FG
Sbjct: 277 SRSAYGPDKLLFIDCKKNNAAAATTTCAGDERPTTSGAEPRVVRLFG 323
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,602,852
Number of Sequences: 37544
Number of extensions: 299881
Number of successful extensions: 850
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -