Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0458
         (575 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                   140   6e-34
SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)              87   1e-17
SB_9825| Best HMM Match : EFG_C (HMM E-Value=1.3e-33)                  87   1e-17
SB_12004| Best HMM Match : EFG_C (HMM E-Value=1.2e-15)                 66   3e-11
SB_36048| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.055
SB_19451| Best HMM Match : EFG_C (HMM E-Value=1.8e-13)                 32   0.29 
SB_1015| Best HMM Match : Extensin_2 (HMM E-Value=0.11)                32   0.39 
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_44930| Best HMM Match : PCMT (HMM E-Value=3.1e-09)                  28   4.8  
SB_59638| Best HMM Match : HNF-1_N (HMM E-Value=0)                     28   6.3  
SB_46599| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_56407| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  

>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score =  140 bits (340), Expect = 6e-34
 Identities = 67/82 (81%), Positives = 68/82 (82%)
 Frame = +1

Query: 10  GVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVL 189
           GVLNRRRG V EES VAGTPMFIVKAYLPV ESFGFTADLRS TGGQAFPQCVFDHWQVL
Sbjct: 736 GVLNRRRGQVLEESNVAGTPMFIVKAYLPVMESFGFTADLRSKTGGQAFPQCVFDHWQVL 795

Query: 190 PGDPCEPQSKPYNVVQETRKRK 255
           PGD  +  S P  VV  TRKRK
Sbjct: 796 PGDVHDLASMPGQVVANTRKRK 817


>SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 809

 Score = 86.6 bits (205), Expect = 1e-17
 Identities = 35/65 (53%), Positives = 50/65 (76%)
 Frame = +1

Query: 13  VLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLP 192
           VL RRRGHV +++ V G+P++ +KA++P  +SFGF  DLR++T GQAF   VF HWQ++P
Sbjct: 717 VLARRRGHVTQDAPVPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFCLSVFHHWQIVP 776

Query: 193 GDPCE 207
           GDP +
Sbjct: 777 GDPLD 781


>SB_9825| Best HMM Match : EFG_C (HMM E-Value=1.3e-33)
          Length = 119

 Score = 86.6 bits (205), Expect = 1e-17
 Identities = 35/65 (53%), Positives = 50/65 (76%)
 Frame = +1

Query: 13  VLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLP 192
           VL RRRGHV +++ V G+P++ +KA++P  +SFGF  DLR++T GQAF   VF HWQ++P
Sbjct: 27  VLARRRGHVTQDAPVPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFCLSVFHHWQIVP 86

Query: 193 GDPCE 207
           GDP +
Sbjct: 87  GDPLD 91


>SB_12004| Best HMM Match : EFG_C (HMM E-Value=1.2e-15)
          Length = 549

 Score = 65.7 bits (153), Expect = 3e-11
 Identities = 30/67 (44%), Positives = 40/67 (59%)
 Frame = +1

Query: 1   RHEGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHW 180
           R   V+ RR G V  E    G+ +F V+A LPV ESFGF+ ++R  T G A PQ +F HW
Sbjct: 429 RMYAVIARREGRVLSEEMKEGSDVFDVEAVLPVAESFGFSEEIRKRTSGLANPQLMFSHW 488

Query: 181 QVLPGDP 201
           + +  DP
Sbjct: 489 EAIDLDP 495


>SB_36048| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 312

 Score = 34.7 bits (76), Expect = 0.055
 Identities = 21/53 (39%), Positives = 28/53 (52%)
 Frame = +2

Query: 95  LSMSRSVLLPICVPTPADRPSRSAYSTIGRSSLETRANLRASPTTLYRKRERG 253
           +S +   L P+ VPTPA R      S + RS  +TRAN+R SP       +RG
Sbjct: 157 ISSTPQTLSPVSVPTPATR------SVLKRSPGKTRANIRGSPRYHDHSHQRG 203


>SB_19451| Best HMM Match : EFG_C (HMM E-Value=1.8e-13)
          Length = 238

 Score = 32.3 bits (70), Expect = 0.29
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = +1

Query: 16  LNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQ 150
           +NRR G V       G   F + A +P+N+ FG+  +LRS T G+
Sbjct: 161 VNRRHGQVTGTDANEG--YFTLFAEVPLNDMFGYATELRSQTQGK 203


>SB_1015| Best HMM Match : Extensin_2 (HMM E-Value=0.11)
          Length = 828

 Score = 31.9 bits (69), Expect = 0.39
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +2

Query: 134 PTPADRPSRSAYSTIGRSSLETRANLRASPTTLYRKRERGRIEGRSPR 277
           P+P    SR A S  G SS     ++ +SPT +Y   +R R +   PR
Sbjct: 85  PSPTPVTSRPASSRSGYSSKSGTKSIHSSPTAMYLGFQRTRCKSAPPR 132


>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6489

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = +2

Query: 32   VTFSKSPRWQVHLCSL*RPTYLSMSRSVLLPICVPTPADRPSRSAYSTIGRSSL 193
            V+ +K P +   L SL  P  +  S S  L    P+P  +PS    S I +S++
Sbjct: 3071 VSRNKPPEYSTVLASLSTPKEVHQSASEPLKRVSPSPGGKPSDKVSSVISQSTI 3124


>SB_44930| Best HMM Match : PCMT (HMM E-Value=3.1e-09)
          Length = 283

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
 Frame = -1

Query: 179 QWSNTHCGKACPPVLE--RKSAVKPNDSL 99
           Q+   +CG ACPP  E   KS VK N  L
Sbjct: 159 QYDRVYCGAACPPDFEDYMKSLVKVNGIL 187


>SB_59638| Best HMM Match : HNF-1_N (HMM E-Value=0)
          Length = 808

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
 Frame = +1

Query: 184 VLPGDPCEPQS-KPYNVVQETRK 249
           +LP  PCEP S KPY    E R+
Sbjct: 65  ILPASPCEPDSPKPYTPESEGRE 87


>SB_46599| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4482

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -3

Query: 300  ICPNIELSLGDLPSILPLSRFLYNVVGLALR 208
            ICP    S+G+LP   P+   L N + +  R
Sbjct: 3317 ICPGDHFSMGELPHARPVGMILANSISIRYR 3347


>SB_56407| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2028

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = -3

Query: 522  TVQVDMCIYITMSYQKNDIVWFIIYLVECDIFSCCLTCAS 403
            T  ++   Y   +   N +   +  ++E  +F CC TCAS
Sbjct: 1739 TSWMEFAPYTVFNKSTNHLTGLMPQVIESMVFECCRTCAS 1778


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,449,129
Number of Sequences: 59808
Number of extensions: 362905
Number of successful extensions: 1009
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1002
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1373676929
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)