Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0458
         (575 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81068-5|CAB02985.1|  852|Caenorhabditis elegans Hypothetical pr...   159   1e-39
M86959-1|AAD03339.1|  852|Caenorhabditis elegans elongation fact...   159   1e-39
U50193-2|AAA91248.1|  974|Caenorhabditis elegans Elongation fact...    83   1e-16
M86958-1|AAA21824.1|  849|Caenorhabditis elegans eft-1 protein.        83   1e-16
Z83235-8|CAB05774.2|  894|Caenorhabditis elegans Hypothetical pr...    53   1e-07
Z83235-9|CAI79209.1|  705|Caenorhabditis elegans Hypothetical pr...    47   1e-05
AF068713-7|AAC17798.2|  359|Caenorhabditis elegans Hypothetical ...    29   1.8  
AF016661-4|AAB66050.2|  567|Caenorhabditis elegans Hypothetical ...    29   3.1  
AF036705-6|AAB95173.1|  119|Caenorhabditis elegans Hypothetical ...    28   5.5  
Z92826-4|CAB07322.1|  309|Caenorhabditis elegans Hypothetical pr...    27   9.5  

>Z81068-5|CAB02985.1|  852|Caenorhabditis elegans Hypothetical protein
            F25H5.4 protein.
          Length = 852

 Score =  159 bits (387), Expect = 1e-39
 Identities = 71/82 (86%), Positives = 75/82 (91%)
 Frame = +1

Query: 10   GVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVL 189
            GVLNRRRGHVFEESQV GTPMF+VKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVL
Sbjct: 755  GVLNRRRGHVFEESQVTGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVL 814

Query: 190  PGDPCEPQSKPYNVVQETRKRK 255
            PGDP E  +KP  +V +TRKRK
Sbjct: 815  PGDPLEAGTKPNQIVLDTRKRK 836


>M86959-1|AAD03339.1|  852|Caenorhabditis elegans elongation factor
            protein.
          Length = 852

 Score =  159 bits (387), Expect = 1e-39
 Identities = 71/82 (86%), Positives = 75/82 (91%)
 Frame = +1

Query: 10   GVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVL 189
            GVLNRRRGHVFEESQV GTPMF+VKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVL
Sbjct: 755  GVLNRRRGHVFEESQVTGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVL 814

Query: 190  PGDPCEPQSKPYNVVQETRKRK 255
            PGDP E  +KP  +V +TRKRK
Sbjct: 815  PGDPLEAGTKPNQIVLDTRKRK 836


>U50193-2|AAA91248.1|  974|Caenorhabditis elegans Elongation factor
            protein 1 protein.
          Length = 974

 Score = 83.0 bits (196), Expect = 1e-16
 Identities = 34/65 (52%), Positives = 47/65 (72%)
 Frame = +1

Query: 13   VLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLP 192
            VL +RRGHV  ++ + G+PM+ + AY+PV +SFGF  DLR +T GQAF    F HWQ++P
Sbjct: 853  VLAKRRGHVTTDAPMPGSPMYTISAYIPVMDSFGFETDLRIHTQGQAFCMSAFHHWQLVP 912

Query: 193  GDPCE 207
            GDP +
Sbjct: 913  GDPLD 917


>M86958-1|AAA21824.1|  849|Caenorhabditis elegans eft-1 protein.
          Length = 849

 Score = 83.0 bits (196), Expect = 1e-16
 Identities = 34/65 (52%), Positives = 47/65 (72%)
 Frame = +1

Query: 13  VLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLP 192
           VL +RRGHV  ++ + G+PM+ + AY+PV +SFGF  DLR +T GQAF    F HWQ++P
Sbjct: 728 VLAKRRGHVTTDAPMPGSPMYTISAYIPVMDSFGFETDLRIHTQGQAFCMSAFHHWQLVP 787

Query: 193 GDPCE 207
           GDP +
Sbjct: 788 GDPLD 792


>Z83235-8|CAB05774.2|  894|Caenorhabditis elegans Hypothetical
           protein K10C3.5a protein.
          Length = 894

 Score = 53.2 bits (122), Expect = 1e-07
 Identities = 27/63 (42%), Positives = 34/63 (53%)
 Frame = +1

Query: 13  VLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLP 192
           VL++R+  V  E     T +F V + +PV ESF F   LR  T G A  Q  F HWQV+ 
Sbjct: 776 VLSQRKSKVLSEDINEATNLFEVVSLMPVVESFSFCDQLRKFTSGMASAQLQFSHWQVID 835

Query: 193 GDP 201
            DP
Sbjct: 836 EDP 838


>Z83235-9|CAI79209.1|  705|Caenorhabditis elegans Hypothetical
           protein K10C3.5b protein.
          Length = 705

 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 24/55 (43%), Positives = 28/55 (50%)
 Frame = +1

Query: 37  VFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDP 201
           V  E     T +F V + +PV ESF F   LR  T G A  Q  F HWQV+  DP
Sbjct: 595 VLSEDINEATNLFEVVSLMPVVESFSFCDQLRKFTSGMASAQLQFSHWQVIDEDP 649


>AF068713-7|AAC17798.2|  359|Caenorhabditis elegans Hypothetical
           protein T24A6.11 protein.
          Length = 359

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = -2

Query: 424 LLSHLRVCFNMMRNMCC*K*TCVKXFPYRYVFLICFNYVV 305
           +L+ LR+C+       C + TC K FP ++V L+  ++VV
Sbjct: 290 ILTPLRICYTSCLFQHC-QITCQKNFPTKFVDLLSLSHVV 328


>AF016661-4|AAB66050.2|  567|Caenorhabditis elegans Hypothetical
           protein F02E11.1 protein.
          Length = 567

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -3

Query: 192 REDLPMVEYALREGLSAGVGTQIGSKTERLID 97
           +ED+  +EY + E  ++ +GTQ+  KT   +D
Sbjct: 232 QEDVTRIEYLIHEYQNSDIGTQMLKKTRTAVD 263


>AF036705-6|AAB95173.1|  119|Caenorhabditis elegans Hypothetical
           protein F37C4.7 protein.
          Length = 119

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = +2

Query: 479 WYDIVM*MHMSTCTVIIILNYIFFL 553
           W+ I++ + ++ CT+II+   +FFL
Sbjct: 94  WFSIILILSLALCTLIILALSLFFL 118


>Z92826-4|CAB07322.1|  309|Caenorhabditis elegans Hypothetical
           protein C18D11.4 protein.
          Length = 309

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +2

Query: 155 SRSAYSTIGRSSLETRANLR-ASPTTLYRKRERGRIEGRSPR 277
           SRS   +  RS   +R   R AS + +Y +RER     RSPR
Sbjct: 5   SRSNSRSQSRSRENSRGRSRSASKSPVYHRRERESSRSRSPR 46


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,967,933
Number of Sequences: 27780
Number of extensions: 277773
Number of successful extensions: 704
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)