BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= prgv0457 (700 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po... 26 4.5 SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S... 25 7.9 >SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces pombe|chr 1|||Manual Length = 619 Score = 26.2 bits (55), Expect = 4.5 Identities = 12/28 (42%), Positives = 21/28 (75%) Frame = -1 Query: 382 AGSLDSISKRAVRQEVSYDEHETIRHGT 299 AG ++ ++K+A+R +YDEHE R+G+ Sbjct: 2 AGGIE-LAKKAIRSLKNYDEHEN-RYGS 27 >SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |Schizosaccharomyces pombe|chr 1|||Manual Length = 672 Score = 25.4 bits (53), Expect = 7.9 Identities = 13/36 (36%), Positives = 19/36 (52%) Frame = +1 Query: 337 LLVEPLFSISSRGNPLLPTTSHSWSPARLCPFTPPI 444 L V P + R + LP T+H + + PFTPP+ Sbjct: 457 LTVFPSINSFGRRHSNLPQTTHVDTGEQNTPFTPPL 492 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,830,989 Number of Sequences: 5004 Number of extensions: 57108 Number of successful extensions: 151 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 148 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 151 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 323158234 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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