Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0457
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0231 + 19050105-19050567,19051376-19052648,19052743-19054171     32   0.38 
05_03_0377 + 13271936-13272062,13272547-13272641,13273861-132739...    29   3.5  
01_06_1257 - 35778078-35778299,35778952-35779069,35779294-357794...    29   4.7  

>03_04_0231 + 19050105-19050567,19051376-19052648,19052743-19054171
          Length = 1054

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 17/55 (30%), Positives = 29/55 (52%)
 Frame = +3

Query: 378 PAPPHDLSQLESRKALSFHPSYLAYSLTIFPGRRRPI*LYSPTRRHDDTTVYYSS 542
           P P  + +++  +K +  +PS L+ S   F GR+    LYSP R  +D   ++ S
Sbjct: 240 PRPSKETARMIKKKLVEENPSVLSGSQPAFDGRKN---LYSPVRFQEDRVEFFVS 291


>05_03_0377 +
           13271936-13272062,13272547-13272641,13273861-13273918,
           13274079-13274273,13274647-13274723,13275015-13275097,
           13275748-13275799,13275912-13275980,13276215-13276301,
           13276401-13276462,13276758-13276900,13277045-13277088
          Length = 363

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +2

Query: 212 VIHGSSLLQRRKSVHKVWHNGLIFKLFNMGA 304
           V++GS LL RRKS+   W+  L+  L ++ A
Sbjct: 60  VVYGSILLYRRKSLQMKWYYYLVLALVDVEA 90


>01_06_1257 -
           35778078-35778299,35778952-35779069,35779294-35779433,
           35779763-35779864,35779971-35780051,35780333-35780402,
           35781053-35781114,35781789-35782183,35782303-35782386,
           35782949-35783041,35783144-35783195,35783310-35783376,
           35783492-35783550,35784209-35784256,35784927-35785040,
           35785162-35785335,35785417-35785944,35786025-35786094,
           35786668-35786711
          Length = 840

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = +2

Query: 224 SSLLQRRKSVHKVWH--NGLIFKLFNMGAVPDSLVLIIRDFLSN 349
           SS+ QR K + +VW   NGL  KL+N    P+ LV +  + LS+
Sbjct: 503 SSMEQRAKGL-RVWRDTNGLASKLYNFKRDPEPLVSLSTEQLSD 545


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,863,714
Number of Sequences: 37544
Number of extensions: 427577
Number of successful extensions: 1138
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1138
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)