Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0457
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical pr...    52   5e-07
AC090999-1|AAK26146.1|  390|Caenorhabditis elegans Hypothetical ...    36   0.028
AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical ...    32   0.34 
Z48245-1|CAA88290.1|  356|Caenorhabditis elegans Hypothetical pr...    29   3.2  
U53153-9|AAC69041.1|  511|Caenorhabditis elegans Hypothetical pr...    28   5.6  
AF047662-7|AAC04439.1|  955|Caenorhabditis elegans Hypothetical ...    28   5.6  
AC006615-3|AAK68232.1| 1148|Caenorhabditis elegans Hypothetical ...    28   5.6  
AC006615-2|AAK68231.1| 1121|Caenorhabditis elegans Hypothetical ...    28   5.6  
Z81517-3|CAB04210.1|  802|Caenorhabditis elegans Hypothetical pr...    27   9.8  
AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical ...    27   9.8  

>U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical
           protein F31A9.6 protein.
          Length = 358

 Score = 51.6 bits (118), Expect = 5e-07
 Identities = 50/167 (29%), Positives = 78/167 (46%), Gaps = 7/167 (4%)
 Frame = +2

Query: 203 TKXVIHGSSL----LQRRKSVHKVWHNGLIFKLFNMGAVPDSLVLIIRDFLSNRSFRYRV 370
           TK + HG  +    L   K+  ++ H+ L+ KL ++     +L++ + +FLSNRSFR R+
Sbjct: 5   TKSIDHGEQIDIIYLDFSKAFDRLPHDLLLDKLVSLRK-NKNLLIWVNEFLSNRSFRVRI 63

Query: 371 EGTRSSPRPLTAGVPQGXXXXXXXXXXXXNDIPWSPPTHLAL--FADTSTRRHDCLLFQ* 544
             T SS +  T GVPQG            NDI    P  +A   FAD      D  L+  
Sbjct: 64  GQTLSSRKFATCGVPQGAVLSPLLFGIYVNDISSILPEKVACKQFAD------DTKLYAS 117

Query: 545 KQVPNREEASERSL-ALGQWFRKWRIDINPAKSTAVLFSDGKLHTDF 682
                 E   + +L A+  W +  ++ +N +K+  V  + GK   DF
Sbjct: 118 TPKTESENNLQSALDAVVDWTKGSKLTLNQSKTVHV--TVGKRRIDF 162


>AC090999-1|AAK26146.1|  390|Caenorhabditis elegans Hypothetical
           protein Y82E9BR.8 protein.
          Length = 390

 Score = 35.9 bits (79), Expect = 0.028
 Identities = 16/29 (55%), Positives = 18/29 (62%)
 Frame = -2

Query: 465 ISLTNKLNRRGERTEPCGTPAVRGRGEER 379
           ISLTN     GERT+PCGTP     G E+
Sbjct: 50  ISLTNMPKSTGERTDPCGTPHTAFLGSEK 78


>AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical
           protein R11E3.3 protein.
          Length = 931

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 34/149 (22%), Positives = 59/149 (39%), Gaps = 2/149 (1%)
 Frame = +2

Query: 233 LQRRKSVHKVWHNGLIFKLFNMGAVPDSLVLIIRDFLSNRSFRYRVEGTRSSPRPLTAGV 412
           L  R +  KV    L   L     +   + L + ++L  R  R   +   S    L  GV
Sbjct: 474 LDLRAAFDKVPTKKLCNDLMEAQGIEPKIKLWLGNYLHKRLIRTSHDNHWSKWHTLLGGV 533

Query: 413 PQGXXXXXXXXXXXXNDIPWSPPTHLALFADTSTRRHDCLLFQ*KQVPNREEASERSL-A 589
           PQG             D+P    T L  +AD  +     ++ + K++    E  +  +  
Sbjct: 534 PQGSVISPNLFTFYLKDMPTQQDTMLISYADDMS-----IIARDKKIEKAAEKVQLHIDE 588

Query: 590 LGQWFRKWRIDINPAKSTAVLFS-DGKLH 673
           + ++ ++  + I+  KST  +FS D K H
Sbjct: 589 IAKYLKERGMSISAEKSTVTVFSCDPKEH 617



 Score = 31.9 bits (69), Expect = 0.45
 Identities = 22/66 (33%), Positives = 29/66 (43%)
 Frame = +3

Query: 3   ARATSYRPISLLMSXXXXXXXXXXXXXXDFVSSKGILIDEQFGFRTNHSCVQQVHRLTEH 182
           A A+SYRPISLL                + + S       Q GF+  HS    V ++T  
Sbjct: 400 AIASSYRPISLLSPIAKLLEKAILKRIKNSIESPA----HQHGFKPEHSTTTAVIQVTND 455

Query: 183 ILVGLN 200
           I+ GLN
Sbjct: 456 IIGGLN 461


>Z48245-1|CAA88290.1|  356|Caenorhabditis elegans Hypothetical
           protein T27D1.3 protein.
          Length = 356

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
 Frame = +3

Query: 384 PPHDLSQLESRKALSFHPSY-LAYSLTIFPGRRR-PI*LYSPTRRHDDTTVYYSSRNKSL 557
           PP+D   L +  A++   S  L Y+L     RRR    LY P+   ++T  YYS  N S+
Sbjct: 289 PPYDFILLMNALAMTCSASNPLLYTLFSQKFRRRLRDVLYCPSDVENETKTYYSINNTSI 348

Query: 558 IAKK 569
           +  +
Sbjct: 349 VGPR 352


>U53153-9|AAC69041.1|  511|Caenorhabditis elegans Hypothetical
           protein T19A5.5 protein.
          Length = 511

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 284 KLFNMGAVPDSLVLIIRDFLSNRSFRYRVE 373
           + F +G  PDS +L    FL+ + FRY V+
Sbjct: 82  RCFQLGMRPDSKILYFATFLNLQLFRYSVQ 111


>AF047662-7|AAC04439.1|  955|Caenorhabditis elegans Hypothetical
           protein T22B2.1 protein.
          Length = 955

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
 Frame = -1

Query: 358 KRAVRQEVSYDEHETIRHGTHVE*FENQTVVPDFVNAFA-TLKKRAPV 218
           +R++++ ++  ++ETIR     E  E  T   +FV A+  TLKK AP+
Sbjct: 831 RRSLKKRINSMKNETIRSDDIPELREFPTFSDEFVKAYKDTLKKDAPL 878


>AC006615-3|AAK68232.1| 1148|Caenorhabditis elegans Hypothetical
           protein C36B7.5b protein.
          Length = 1148

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +3

Query: 279 FSNYSTWVPCRIVSCSSYETSCRTALFDIESREPAPP 389
           ++ ++ W PC  + C +   S R  +  +E + PAPP
Sbjct: 701 WNRWTEWSPC--IGCGNEGISKRNRVCSMEGQSPAPP 735


>AC006615-2|AAK68231.1| 1121|Caenorhabditis elegans Hypothetical
           protein C36B7.5a protein.
          Length = 1121

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +3

Query: 279 FSNYSTWVPCRIVSCSSYETSCRTALFDIESREPAPP 389
           ++ ++ W PC  + C +   S R  +  +E + PAPP
Sbjct: 701 WNRWTEWSPC--IGCGNEGISKRNRVCSMEGQSPAPP 735


>Z81517-3|CAB04210.1|  802|Caenorhabditis elegans Hypothetical
           protein F28B1.3 protein.
          Length = 802

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +2

Query: 305 VPDSLVLIIRDFLSNRSFRYRVEGTRSSPRPLT 403
           +PD  ++I R+       R  V GT+SSP PLT
Sbjct: 407 LPDHYLMIFREEAHPIFMRRFVNGTQSSPIPLT 439


>AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical
            protein F39C12.1 protein.
          Length = 5105

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/44 (29%), Positives = 26/44 (59%)
 Frame = -2

Query: 405  AVRGRGEERVPSTRYRKERFDKKSRMMSTRLSGTAPMLNSLKIK 274
            A+  R +++     YRK+  ++++R++S  +S    +LN LK K
Sbjct: 1877 ALATRVQKQNEKVHYRKKAAEREARILSGEISVKPSLLNELKKK 1920


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,180,495
Number of Sequences: 27780
Number of extensions: 342462
Number of successful extensions: 819
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)