Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0457
         (700 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g41840.1 68418.m05095 F-box family protein contains F-box dom...    29   3.9  
At3g59330.1 68416.m06615 anthocyanin-related membrane protein fa...    28   6.8  
At5g52870.1 68418.m06562 expressed protein similar to unknown pr...    27   9.0  
At1g09290.1 68414.m09506 expressed protein This gene is continue...    27   9.0  

>At5g41840.1 68418.m05095 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 540

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = +3

Query: 423 LSFHPSYLAYSLTIFPGRRRPI*LYSPTRRHDDTTVYYSSRNKSLIAKKLQS 578
           LSF P+  A S T+   R +P+  + P    DD+  ++    ++  +K  +S
Sbjct: 28  LSFLPTKEAASTTVLAKRWKPLLAFVPNLNFDDSIYFHPRARRNKYSKSYES 79


>At3g59330.1 68416.m06615 anthocyanin-related membrane protein
           family similar to anthocyanin-related membrane protein 1
           (GI:16416383),  anthocyanin-related membrane protein 2
           (GI:16416385), anthocyanin-related membrane protein 3
           (GI:16416387) [Arabidopsis thaliana]
          Length = 241

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +3

Query: 90  FVSSKGILIDEQFGFRTNHSCVQQVHRLTE-HILVGLNRP 206
           F SS+    D  F F +NH   +  H LT+  I +G+N P
Sbjct: 33  FTSSEIARKDFSFFFFSNHPIFKHSHELTKFEIFIGINAP 72


>At5g52870.1 68418.m06562 expressed protein similar to unknown
           protein (gb|AAF24565.1)
          Length = 326

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = -2

Query: 426 TEPCGTPAVRGRGEERVPSTRYRKERFDKKSRMMSTRLSGTAP 298
           T P  +PA R +    +PS      R   KSR  S  + G +P
Sbjct: 197 TSPTSSPATREKQRSNIPSGMRSVRRQLGKSRSASAAIGGMSP 239


>At1g09290.1 68414.m09506 expressed protein This gene is continued
           on the 5' end of BAC T12M14
          Length = 348

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
 Frame = +1

Query: 526 LFTIPVETSP*S----RRSFRAQPSPRTVVPKMAHRHQPSEKYCG 648
           LFT PVE SP +     R F++  S     P   HR  P +  CG
Sbjct: 163 LFTFPVENSPNTTNIVSRVFQSMESGALKAPIWCHRIFPVQATCG 207


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,280,323
Number of Sequences: 28952
Number of extensions: 318428
Number of successful extensions: 862
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)