Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0455
         (699 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI000049A56F Cluster: protein kinase; n=1; Entamoeba h...    34   2.9  
UniRef50_A3LWR7 Cluster: Predicted protein; n=2; Pichia|Rep: Pre...    34   3.9  
UniRef50_Q15XA1 Cluster: Serine/threonine protein kinase with TP...    33   6.7  
UniRef50_Q6ZQV8 Cluster: CDNA FLJ46861 fis, clone UTERU3011092; ...    33   8.9  

>UniRef50_UPI000049A56F Cluster: protein kinase; n=1; Entamoeba
           histolytica HM-1:IMSS|Rep: protein kinase - Entamoeba
           histolytica HM-1:IMSS
          Length = 1637

 Score = 34.3 bits (75), Expect = 2.9
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = -1

Query: 366 SNHLFLISTKSTENTRSLLNVTFYSV-TYQQSFSIINRIHERTLIVRLLCSEYY 208
           +N+ F+     T N   L   +F SV T +Q F++ N I   T I+   CS YY
Sbjct: 645 ANYSFVYFPSQTNNINVLFKNSFDSVVTSEQPFNLRNEITHSTKIITSYCSSYY 698


>UniRef50_A3LWR7 Cluster: Predicted protein; n=2; Pichia|Rep:
           Predicted protein - Pichia stipitis (Yeast)
          Length = 716

 Score = 33.9 bits (74), Expect = 3.9
 Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
 Frame = -1

Query: 357 LFLISTKSTENTRSLLNVTFYSVTYQQSFSIINRI-----HERTLIVRLLCSEYYSIGGP 193
           L L +  S +NTR  L     S+TY++  S +N++      E+  I RLL  E  S+  P
Sbjct: 140 LNLYNNSSNDNTRMWLVKLSNSITYKRLISTMNKLGEMGDSEKNYITRLLLGE--SVYSP 197

Query: 192 LIKSTRV 172
           L+K T++
Sbjct: 198 LVKVTKM 204


>UniRef50_Q15XA1 Cluster: Serine/threonine protein kinase with TPR
           repeats; n=1; Pseudoalteromonas atlantica T6c|Rep:
           Serine/threonine protein kinase with TPR repeats -
           Pseudoalteromonas atlantica (strain T6c / BAA-1087)
          Length = 911

 Score = 33.1 bits (72), Expect = 6.7
 Identities = 17/44 (38%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
 Frame = +2

Query: 152 TVVYKEPTLV-DFIKGPPIE*YSEHNNLTISVRS*ILLIIEKLC 280
           T +  +P LV +FI+G PI+ Y + NNL+++ R   L + +K+C
Sbjct: 150 TTLTNQPYLVMEFIEGTPIDQYCQENNLSLNQR---LRLFQKVC 190


>UniRef50_Q6ZQV8 Cluster: CDNA FLJ46861 fis, clone UTERU3011092;
           n=3; Homo sapiens|Rep: CDNA FLJ46861 fis, clone
           UTERU3011092 - Homo sapiens (Human)
          Length = 291

 Score = 32.7 bits (71), Expect = 8.9
 Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = -2

Query: 677 YLLIYITK*FCNNIIITIYVHVYS-IYIEFY*ILQNVISAYSHRH 546
           Y+ +YI    C ++ +  Y+H+Y+ +YI  Y  +   + +Y HR+
Sbjct: 205 YICVYIHIYICIHVCVYSYIHMYTYVYIHVYIGIHMCVYSYMHRY 249


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 551,065,789
Number of Sequences: 1657284
Number of extensions: 9522518
Number of successful extensions: 17782
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 17036
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17763
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55371905986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)