Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0455
         (699 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory recept...    23   3.2  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    21   9.7  
AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    21   9.7  
AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory recept...    21   9.7  

>AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory receptor
           candidate 5 protein.
          Length = 522

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 601 YILYTCTYIVIMMLLQNY 654
           +I+Y   Y V+ MLLQ Y
Sbjct: 155 FIVYFLIYAVLEMLLQKY 172


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -3

Query: 286 LSTELFYYQ 260
           LST LFYYQ
Sbjct: 274 LSTRLFYYQ 282


>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -3

Query: 319 FTSKCYFL 296
           FT KCYFL
Sbjct: 51  FTKKCYFL 58


>AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory receptor
           candidate 36 protein.
          Length = 355

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -1

Query: 303 TFYSVTYQQSFSIINRIHERTLIVRLLCSEYYSIGGPLI 187
           T+ SVT   +++     H  + I+  +CS YY +   LI
Sbjct: 141 TYLSVTCYVTYAWSPIDHTESNIINDMCSLYYILQITLI 179


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,206
Number of Sequences: 336
Number of extensions: 2741
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)