Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0455
         (699 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre...    25   7.9  
SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual      25   7.9  

>SPBC19C2.09 |sre1||sterol regulatory element binding protein
           Sre1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 900

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 21/91 (23%), Positives = 41/91 (45%)
 Frame = -1

Query: 345 STKSTENTRSLLNVTFYSVTYQQSFSIINRIHERTLIVRLLCSEYYSIGGPLIKSTRVGS 166
           S  ST ++ S  ++ F    +++   + +     +L   LL     S  G L  + R+ +
Sbjct: 478 SKVSTRSSMSPSSILFRKTVFEKYCLLDHSTSTISLFFGLLIFTLKSAYGYL--THRLSA 535

Query: 165 LYTTVLTWILKYFQLSII*NNQY*LSTNMLG 73
           LYT+   W+    QL+ + N +  L   ++G
Sbjct: 536 LYTSSENWVYSEQQLAEVRNMEKLLDAQLMG 566


>SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 324

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -2

Query: 677 YLLIYITK*FCNNIIITIYVHVYSIYIEFY*ILQNVISAY 558
           + +++    F    I   Y+HV+S Y +    L  +ISAY
Sbjct: 229 FFILFAVHWFALFPIFRKYIHVFSFYADMLMTLVLIISAY 268


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,455,292
Number of Sequences: 5004
Number of extensions: 45463
Number of successful extensions: 91
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)