Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0455
         (699 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50655| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.073
SB_40804| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_8332| Best HMM Match : PDZ (HMM E-Value=1.3e-17)                    29   4.8  
SB_28157| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_56992| Best HMM Match : Copper-bind (HMM E-Value=0.82)              28   8.4  

>SB_50655| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2033

 Score = 34.7 bits (76), Expect = 0.073
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = -2

Query: 155  PF*HGY*NTFNCQSSKIININFRQTCSDTKLHSDYTLL 42
            PF HG+   F+C++  ++ IN     SD KL +D  LL
Sbjct: 1488 PFQHGFRGRFSCETQLLVTINDLAQASDKKLDTDLILL 1525


>SB_40804| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1044

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -2

Query: 155 PF*HGY*NTFNCQSSKIININFRQTCSDTKLHSDYTLL 42
           PF HG+     C++  ++ IN     SD KL +D  LL
Sbjct: 716 PFQHGFRERLFCETQLLVTINDLAQASDKKLDTDLILL 753


>SB_8332| Best HMM Match : PDZ (HMM E-Value=1.3e-17)
          Length = 1038

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -2

Query: 623  YVHVYSIYIEFY*ILQNVISAYSHRHRTNIR 531
            Y HVY  Y + Y    +V   Y+H +RT  R
Sbjct: 919  YAHVYRTYAQVYRTYAHVYRTYAHVYRTYAR 949


>SB_28157| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 605

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = -2

Query: 185 NRPESVPYILPF*HGY*NTFNCQSSKIININFRQTCSDTKLHSDYTLL 42
           N  E+  ++ PF HG+    +C++  ++  N      D K  +D  LL
Sbjct: 384 NHLEANGFLSPFQHGFRERHSCETQLLLTYNDLALAMDKKQQTDLLLL 431


>SB_56992| Best HMM Match : Copper-bind (HMM E-Value=0.82)
          Length = 1642

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -1

Query: 228 LLCSEYYSIGGPLIKSTRVGSLYTTVLTW 142
           + CSE  S+GGP++     G +   V+ W
Sbjct: 773 ITCSEISSLGGPVVSLETCGRVDALVIVW 801


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,172,556
Number of Sequences: 59808
Number of extensions: 298404
Number of successful extensions: 437
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 437
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)