Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0455
         (699 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK128694-1|BAC87575.1|  291|Homo sapiens protein ( Homo sapiens ...    33   1.3  
BX470111-6|CAO03576.1|  247|Homo sapiens BRCA1/BRCA2-containing ...    30   6.9  
BX293995-4|CAO03602.1|  247|Homo sapiens BRCA1/BRCA2-containing ...    30   6.9  

>AK128694-1|BAC87575.1|  291|Homo sapiens protein ( Homo sapiens
           cDNA FLJ46861 fis, clone UTERU3011092. ).
          Length = 291

 Score = 32.7 bits (71), Expect = 1.3
 Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = -2

Query: 677 YLLIYITK*FCNNIIITIYVHVYS-IYIEFY*ILQNVISAYSHRH 546
           Y+ +YI    C ++ +  Y+H+Y+ +YI  Y  +   + +Y HR+
Sbjct: 205 YICVYIHIYICIHVCVYSYIHMYTYVYIHVYIGIHMCVYSYMHRY 249


>BX470111-6|CAO03576.1|  247|Homo sapiens BRCA1/BRCA2-containing
           complex, subunit 3 protein.
          Length = 247

 Score = 30.3 bits (65), Expect = 6.9
 Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
 Frame = -1

Query: 348 ISTKSTENTRSLLNVTFYSVTYQQSFSI-----INRIHERTLIVRLLCSEYYSIGGPLIK 184
           I  K+T+  R +L   F S+  Q+S  +     + +IH  ++  + LCS+  ++ GPL++
Sbjct: 158 IEDKNTKTGR-VLYTCFQSIQAQKSSDLTHLDSVTKIHNGSVFTKNLCSQMSAVSGPLLQ 216


>BX293995-4|CAO03602.1|  247|Homo sapiens BRCA1/BRCA2-containing
           complex, subunit 3 protein.
          Length = 247

 Score = 30.3 bits (65), Expect = 6.9
 Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
 Frame = -1

Query: 348 ISTKSTENTRSLLNVTFYSVTYQQSFSI-----INRIHERTLIVRLLCSEYYSIGGPLIK 184
           I  K+T+  R +L   F S+  Q+S  +     + +IH  ++  + LCS+  ++ GPL++
Sbjct: 158 IEDKNTKTGR-VLYTCFQSIQAQKSSDLTHLDSVTKIHNGSVFTKNLCSQMSAVSGPLLQ 216


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,783,884
Number of Sequences: 237096
Number of extensions: 1368097
Number of successful extensions: 5889
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5888
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8063224416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)