Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0455
         (699 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g02310.1 68417.m00312 kelch repeat-containing F-box family pr...    31   0.73 
At3g48190.1 68416.m05257 ataxia-telangiectasia mutated protein (...    28   5.2  

>At4g02310.1 68417.m00312 kelch repeat-containing F-box family
           protein contains Pfam PF00646: F-box domain; contains
           Pfam PF01344 : Kelch motif;
          Length = 349

 Score = 31.1 bits (67), Expect = 0.73
 Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = -1

Query: 411 LARPPRAYFSK*KCHSNHL-FLISTKSTENTRSLLNVTFYSVTYQQ 277
           LAR PR Y     C S +L FL+S+   + TRSLL    + V +Q+
Sbjct: 25  LARVPRWYHPILSCVSKNLRFLVSSSELKITRSLLEKDRFYVCFQE 70


>At3g48190.1 68416.m05257 ataxia-telangiectasia mutated protein (Atm)
            identical to ataxia-telangiectasia mutated protein (Atm)
            [Arabidopsis thaliana] GI:7529272; contains Pfam profile
            PF00855: PWWP domain; contains GA donor splice site at
            exon 73
          Length = 3255

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 18/48 (37%), Positives = 27/48 (56%)
 Frame = -3

Query: 202  RRPLNKIDQSRFLIYYRFNMDIKILSIVNHLK*SILTFDKHARTQNYI 59
            R  L K++ S FLIY    + ++ILS+ N L  S  T  + +R  NY+
Sbjct: 2326 RNHLLKVEHSTFLIY----IFLEILSLSNFLFLSCSTIQQCSRRSNYL 2369


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,839,806
Number of Sequences: 28952
Number of extensions: 204062
Number of successful extensions: 300
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 299
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)