Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0454
         (699 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    24   1.0  
AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory recept...    23   2.4  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    23   3.2  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    23   3.2  
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    22   4.2  
AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    21   7.3  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       21   9.7  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    21   9.7  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    21   9.7  
AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory recept...    21   9.7  

>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -3

Query: 595 MQ*APDVFANKSLSVCSPLSVQYFVKLRNSPPFPNVSS 482
           MQ  P+  +NKS S+  PLS+    +L  +  F  V+S
Sbjct: 26  MQDEPENLSNKSNSITVPLSISTGQRLPANFSFGQVNS 63


>AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory receptor
           candidate 1 protein.
          Length = 373

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 14/60 (23%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = -2

Query: 371 SSMYCIIAIDSTKVTPSISRAGTFCAGLMAL-YSSVSCLPFLQYPPDVLRKVCFLHVALL 195
           S ++C++  +  +    +S+A +FC  + AL Y SV+     +   D+   +     +LL
Sbjct: 20  SEIFCLVNFNHRESYFRLSKAKSFCTFVAALVYCSVTFFALSELLTDLATSILLKVSSLL 79


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +3

Query: 537 ERGLQTLNDLLAKTSGAYCIGDQITL 614
           ERG+ T N ++   S   C GD++ +
Sbjct: 161 ERGILTANRMIPGPSIQVCEGDKVVI 186


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +3

Query: 537 ERGLQTLNDLLAKTSGAYCIGDQITL 614
           ERG+ T N ++   S   C GD++ +
Sbjct: 161 ERGILTANRMIPGPSIQVCEGDKVVI 186


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 8/12 (66%), Positives = 12/12 (100%)
 Frame = +1

Query: 574 KHQELTASEIKL 609
           +H++LTA+EIKL
Sbjct: 116 RHEKLTAAEIKL 127


>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -3

Query: 91  IFCAVSVYDCFLTREDL 41
           + C VS   C+L R +L
Sbjct: 225 LLCVVSTLSCYLERTEL 241


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +3

Query: 372 YET*TETHARHSTTTRPYERNMRDY-CI 452
           Y+   E H R+   ++P++ N  DY C+
Sbjct: 242 YKHHLEYHLRNHAGSKPFQCNKCDYTCV 269


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +3

Query: 498 NGGEFLSFTKYWTERGLQTLNDL 566
           N  EFL    YW +  L   ND+
Sbjct: 431 NNPEFLDAFLYWVDEILANHNDV 453


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -3

Query: 181 TRRQPIGVQNHTIFNH 134
           T  QP+G Q H   NH
Sbjct: 188 TSSQPVGTQIHQQTNH 203


>AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory receptor
           candidate 36 protein.
          Length = 355

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +2

Query: 446 LYPVYNHYKISV*RNIWER 502
           L P YN  K S+   +W++
Sbjct: 23  LVPYYNFEKFSLEHQLWQK 41


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,817
Number of Sequences: 336
Number of extensions: 3605
Number of successful extensions: 13
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)