Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0454
(699 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyce... 30 0.37
SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr ... 29 0.85
SPCC965.07c |gst2||glutathione S-transferase Gst2|Schizosaccharo... 29 0.85
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 28 1.5
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha... 27 2.0
SPBC16D10.01c ||SPBC418.03c|conserved fungal protein|Schizosacch... 27 2.6
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz... 27 2.6
SPCC191.09c |gst1||glutathione S-transferase Gst1|Schizosaccharo... 27 3.4
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc... 27 3.4
SPBC582.08 |||alanine aminotransferase |Schizosaccharomyces pomb... 26 6.0
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|... 25 7.9
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 25 7.9
SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr 1||... 25 7.9
>SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 242
Score = 29.9 bits (64), Expect = 0.37
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +1
Query: 277 YRAINPAQKVPALEIDGVTLVESMAIIQYI 366
Y ++P K P + DGVT +ES AI++++
Sbjct: 42 YTKLSPLGKSPIVVDDGVTYIESAAILEHL 71
>SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 495
Score = 28.7 bits (61), Expect = 0.85
Identities = 28/108 (25%), Positives = 42/108 (38%), Gaps = 2/108 (1%)
Frame = -2
Query: 545 SSFSPVFCEAKEFSSVPKCFFRPKFCNGCIPDTIVSHISLIRARCSAVSGMSFGSGLVSS 366
+S P FCE ++ P F P + + +L+ SAVS + + S
Sbjct: 356 TSVEPTFCETNASVALSTVTSTPVFSTDSSPLSSRTRENLLSLIPSAVSSPTKANTNKSH 415
Query: 365 MYCIIAIDSTK--VTPSISRAGTFCAGLMALYSSVSCLPFLQYPPDVL 228
+TK TPS + A T + YS + +PF P D L
Sbjct: 416 QRSFSIPKATKDSQTPSENSAATLKQAAIDAYSQIPVIPFF-LPSDKL 462
>SPCC965.07c |gst2||glutathione S-transferase
Gst2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 230
Score = 28.7 bits (61), Expect = 0.85
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Frame = +1
Query: 250 KNGKQLTEEYRAINPAQKVPAL---EIDGVTLVESMAIIQYIED 372
+ G+Q +E+ A+NP +VP L + + T+ ES AI+ Y+ D
Sbjct: 37 QKGEQKCKEHLALNPNGRVPTLVDHKNNDYTIWESDAILIYLAD 80
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 27.9 bits (59), Expect = 1.5
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -2
Query: 344 DSTKVTPSISRAGTFCAGLMALYSSVSCLPFLQYPPD 234
+S K+ +IS G+F A L YSS S + + P D
Sbjct: 31 ESLKLKSNISHTGSFFANLSQSYSSTSIIHSVSSPVD 67
>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
Upf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 27.5 bits (58), Expect = 2.0
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Frame = -2
Query: 620 ISQRNLISDAVSS*CFR*QIIERLQSSFSPVFCEAKEFSSVPKCFFRPK-FCNGCIPDTI 444
+S +N+ S+ F ++E+ S +C K +S+ KC K FCN +
Sbjct: 15 VSSKNMTSENGLEHQFEELLVEKQYSEEHCAYCHIKNPNSILKCLHCNKWFCN-VRGKSG 73
Query: 443 VSHI--SLIRARCSAVSGMSFGS 381
SHI L+RAR V+ S S
Sbjct: 74 ASHIISHLVRARHKQVALHSHSS 96
>SPBC16D10.01c ||SPBC418.03c|conserved fungal
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 336
Score = 27.1 bits (57), Expect = 2.6
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +3
Query: 561 DLLAKTSGAYCIGDQITLADICLVP 635
DL K GAYC ++ + D+C+ P
Sbjct: 117 DLKKKIQGAYCSIAELFMTDLCMQP 141
>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 665
Score = 27.1 bits (57), Expect = 2.6
Identities = 16/64 (25%), Positives = 29/64 (45%)
Frame = +1
Query: 349 AIIQYIEDTRPEPKLMPDTALQRARMREICETIVSGIQPLQNFGLKKHLGTEENSLASQN 528
++ +Y + + L+P + IC I SG+ L N G+ H T E +++
Sbjct: 460 SVFEYKDPSTKLSALIPKYFFSELNIASICYEISSGLAFLHNSGIAHHNLTTECIYLTKS 519
Query: 529 TGLK 540
+ LK
Sbjct: 520 SCLK 523
>SPCC191.09c |gst1||glutathione S-transferase
Gst1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 229
Score = 26.6 bits (56), Expect = 3.4
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Frame = +1
Query: 220 TFRRTSGGYCKNGKQLTEEYRAINPAQKVPAL---EIDGVTLVESMAIIQYIED 372
T+ + KN +Q + E+ A+NP +VP L + T+ ES AI+ Y+ D
Sbjct: 28 TYETRYVNFSKN-EQKSPEHLALNPNGRVPTLIDHHNNDYTIWESDAILIYLAD 80
>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 935
Score = 26.6 bits (56), Expect = 3.4
Identities = 16/90 (17%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
Frame = +1
Query: 250 KNGKQLTEEYRAINPAQKVPALEIDGVTLVESMAIIQYIEDTRP-EPKLMPDTALQRARM 426
K+ ++ ++YR+I + + G ++ S + I + PKL+P T
Sbjct: 634 KDNSKIRKDYRSIQSITSRNKVSLKGASVDISSKDKEIISQKKQLSPKLIPSTPYDLPSS 693
Query: 427 REICETIVSGIQPLQNFGLKKHLGTEENSL 516
+I + ++ + P +++ L ++ S+
Sbjct: 694 SQISSSALAQLPPSMQSDIQQQLRLQKRSI 723
>SPBC582.08 |||alanine aminotransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 505
Score = 25.8 bits (54), Expect = 6.0
Identities = 16/63 (25%), Positives = 27/63 (42%)
Frame = -3
Query: 637 CGTRQISANVI*SPMQ*APDVFANKSLSVCSPLSVQYFVKLRNSPPFPNVSSDRNFVMVV 458
CG R +V+ P + ++ +C P++ Q V + +PP P S F+ V
Sbjct: 332 CGQRGGYLDVVNIPEPAKDQILKLATIDICPPVAGQLLVDMLVNPPKPGDPSYDLFIKEV 391
Query: 457 YRI 449
I
Sbjct: 392 DEI 394
>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +3
Query: 345 YGDNTVHRRYET*TETHARHSTTTRPYERNMR 440
+G + H Y T H RHSTT +R+ R
Sbjct: 149 HGSHRRHEPYRTHLSRHHRHSTTNYHSKRDDR 180
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 25.4 bits (53), Expect = 7.9
Identities = 9/34 (26%), Positives = 16/34 (47%)
Frame = -2
Query: 344 DSTKVTPSISRAGTFCAGLMALYSSVSCLPFLQY 243
D T + + +FC + YSS+ C ++Y
Sbjct: 726 DGTSIAHWLQGLASFCGRVFRRYSSLDCTSIVEY 759
>SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 753
Score = 25.4 bits (53), Expect = 7.9
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -3
Query: 262 VYHFYNIHRTFFERYA 215
VYHF I R+ +E YA
Sbjct: 685 VYHFIGIQRSLYENYA 700
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,958,447
Number of Sequences: 5004
Number of extensions: 61941
Number of successful extensions: 174
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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