Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0454
         (699 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11755| Best HMM Match : GST_C (HMM E-Value=2.7e-05)                 66   3e-11
SB_7982| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.68 
SB_5219| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.1  
SB_3922| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.8  
SB_41214| Best HMM Match : Gag_spuma (HMM E-Value=2)                   28   6.3  
SB_47131| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_10633| Best HMM Match : LMWPc (HMM E-Value=0.64)                    28   8.4  
SB_3165| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.4  

>SB_11755| Best HMM Match : GST_C (HMM E-Value=2.7e-05)
          Length = 142

 Score = 66.1 bits (154), Expect = 3e-11
 Identities = 24/40 (60%), Positives = 32/40 (80%)
 Frame = +3

Query: 528 YWTERGLQTLNDLLAKTSGAYCIGDQITLADICLVPQIYN 647
           YW +RG Q L  +L +T+G YC+GD IT+AD+CLVPQ+YN
Sbjct: 59  YWIDRGFQCLEKMLVQTAGKYCVGDDITMADLCLVPQVYN 98



 Score = 48.8 bits (111), Expect = 4e-06
 Identities = 21/52 (40%), Positives = 38/52 (73%), Gaps = 1/52 (1%)
 Frame = +1

Query: 355 IQYIEDTRPEPKLMP-DTALQRARMREICETIVSGIQPLQNFGLKKHLGTEE 507
           ++Y+++TRP+P L+P     +RA +R+I  TI SGIQP+QN  + +++G ++
Sbjct: 1   MEYLDETRPDPPLLPRGDPHKRALVRQISMTIASGIQPIQNLKVLQYVGPDK 52


>SB_7982| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 500

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 18/54 (33%), Positives = 26/54 (48%)
 Frame = -2

Query: 473 FCNGCIPDTIVSHISLIRARCSAVSGMSFGSGLVSSMYCIIAIDSTKVTPSISR 312
           FC GC   T V H     + C+A  GM +G  L S++Y     +     PS++R
Sbjct: 306 FC-GCSHKTAVHHPKTSASSCNASVGMEYGYYLPSNIYSSSEEEKKVYGPSLAR 358


>SB_5219| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 201

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +1

Query: 400 DTALQR-ARMREICETIVSGIQPLQNFGLKKHLGTEENSLASQNTGLKEDCKRS 558
           D  ++R   + E  E  VSG  P +    KK++G +  S A   T LK   KR+
Sbjct: 46  DRDIERIGHVNETVEPQVSGASPTRQSSSKKYMGLKRRSFAYFYTKLKRKSKRN 99


>SB_3922| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 236

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +1

Query: 301 KVPALE-IDGVTLVESMAIIQYIEDTRPEPKLMPDTALQRARMREICETIVSG 456
           KVP LE +DG  + ES+ I +++ED   +  L P     ++R + + +    G
Sbjct: 78  KVPTLETMDGKLIPESVIICEFLEDYYRKIPLYPCDPYAKSRQKLLAQRFDKG 130


>SB_41214| Best HMM Match : Gag_spuma (HMM E-Value=2)
          Length = 454

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +3

Query: 336 SRIYGDNTVHRRYET*TETHARHS-TTTRPYERNMRDYCIRY 458
           +R +G N      +T T+THARH  T TR    N+   CIRY
Sbjct: 303 TRTHGTNIHGLIPQTYTDTHARHKHTRTRTLGINIHG-CIRY 343


>SB_47131| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 726

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 190 CSSNATCKKHTFRRTSGGYCKNGKQLT 270
           C +NATC++HT     G YC+  +  T
Sbjct: 69  CRNNATCQEHTGIGCYGYYCECPRDFT 95


>SB_10633| Best HMM Match : LMWPc (HMM E-Value=0.64)
          Length = 377

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +1

Query: 238 GGYCKNGKQLTEEYRAINPAQKVPALEIDGVTLVESM 348
           GGY K  K  TE Y   NP Q  P ++ID + + E +
Sbjct: 222 GGY-KRLKNETENYG--NPGQTTPLIDIDDIDIAEGI 255


>SB_3165| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1183

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 18/63 (28%), Positives = 24/63 (38%)
 Frame = +1

Query: 130  DNG*KSCDFARLLAVFVFVACSSNATCKKHTFRRTSGGYCKNGKQLTEEYRAINPAQKVP 309
            D G K C+ A  +AVF +  CS          R  SG + K      E   A    +K P
Sbjct: 1056 DRGCKDCEKATRMAVFTYYPCSHRVASSSQ--RVASGSHRKASGSHRERRGASGSHRKAP 1113

Query: 310  ALE 318
              +
Sbjct: 1114 GYQ 1116


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,793,970
Number of Sequences: 59808
Number of extensions: 454617
Number of successful extensions: 1244
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1240
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)