Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0454
         (699 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   1.2  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   8.5  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   8.5  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   8.5  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = +3

Query: 432 NMRDYCIRYTTITKFRSEET-FGNGGEFLSFTKYWTERG 545
           N +   I+  T T FR   T  G G  FL+  K W ERG
Sbjct: 483 NDKSQVIKQNTWTVFRDAITQTGTGPAFLTI-KEWIERG 520


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 193 SSNATCKKHTFRRTSGG 243
           S++ TC  HT R  +GG
Sbjct: 287 SASTTCSGHTVRCFTGG 303


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -2

Query: 533 PVFCEAKEFSSVPKCFF 483
           P+ CE K  +S  KC F
Sbjct: 432 PIGCECKTCNSKTKCCF 448


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -1

Query: 99  IQQFFAPFLFTIVFS 55
           IQ+F A F FT+V++
Sbjct: 723 IQRFAAGFCFTVVYA 737


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,655
Number of Sequences: 438
Number of extensions: 4304
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)