Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0453
         (696 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0218 + 1647624-1647757,1648044-1648112,1648493-1648549,164...    33   0.22 
09_02_0140 + 4879319-4879968,4881443-4881942,4884230-4884368,488...    29   4.7  

>06_01_0218 +
           1647624-1647757,1648044-1648112,1648493-1648549,
           1648768-1648934,1649661-1649716,1650319-1650490,
           1650747-1650810,1651037-1651119,1651243-1651334,
           1652028-1652134,1652398-1652461,1652630-1652770
          Length = 401

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 22/68 (32%), Positives = 37/68 (54%)
 Frame = +1

Query: 490 YQNTLMIVFTVAHG*QCYGHS*ASAHRLGFRCSNI*RRS*CHSAQKSSKGSLLQRRIVNV 669
           +  +L ++F+ AHG     +S A++ RLG +  +  R   C   +    G L +R I  +
Sbjct: 35  FHPSLPLIFSGAHGGSAGVYSVAASTRLGNKIISQGRDGSCKCWEIEEAG-LSRRDIQPI 93

Query: 670 KKSLCKST 693
           K+SLCK+T
Sbjct: 94  KRSLCKTT 101


>09_02_0140 +
           4879319-4879968,4881443-4881942,4884230-4884368,
           4886005-4886156,4886267-4886532,4886902-4887028,
           4887111-4887179,4887270-4887518,4887636-4888012
          Length = 842

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = -3

Query: 688 FYRDSS*HLLYVSAINSPSMISERYGIMTFFKCCYSGILT 569
           F RDS  H+     + +P  I   Y I  FF  CY   LT
Sbjct: 676 FNRDSDTHVSTSILVGTPGYIDPEYVISKFFFICYIQSLT 715


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,347,296
Number of Sequences: 37544
Number of extensions: 357984
Number of successful extensions: 531
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 531
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)