Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0453
         (696 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024838-8|AAF60822.1|  234|Caenorhabditis elegans Thaumatin fam...    31   1.0  
Z92782-3|CAB07189.2|  326|Caenorhabditis elegans Hypothetical pr...    30   1.4  
U41013-2|AAA82300.1|  557|Caenorhabditis elegans Hypothetical pr...    27   9.7  

>AC024838-8|AAF60822.1|  234|Caenorhabditis elegans Thaumatin family
           protein 6 protein.
          Length = 234

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 180 NERLINISYVGCRTSCDFARLDTTTC 257
           N R +N + VGCR+ CD  R D   C
Sbjct: 158 NRRSVNNNVVGCRSPCDALRSDRECC 183


>Z92782-3|CAB07189.2|  326|Caenorhabditis elegans Hypothetical
           protein F14F8.4 protein.
          Length = 326

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +1

Query: 61  SFLHYLSFRNVWSFWVQIKLSDAL 132
           SFL Y+  RN WS+ V I + DA+
Sbjct: 249 SFLSYIEIRNPWSYLVIISIGDAV 272


>U41013-2|AAA82300.1|  557|Caenorhabditis elegans Hypothetical
           protein T06C10.3 protein.
          Length = 557

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 322 HQP*DIRSKVSSIVTGYSYINRQVVVS 242
           H P D   +VS +V G   +NR+V++S
Sbjct: 160 HNPGDFLLRVSEVVEGEHKVNREVILS 186


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,835,148
Number of Sequences: 27780
Number of extensions: 316779
Number of successful extensions: 564
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 564
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)