Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0452
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.16c |fmn1||riboflavin kinase Fmn1|Schizosaccharomyces pom...    70   4e-13
SPBC3D6.07 |gpi3||pig-A|Schizosaccharomyces pombe|chr 2|||Manual       26   4.5  
SPCC757.05c |||acetylornithine deacetylase |Schizosaccharomyces ...    26   6.0  
SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar...    25   7.9  
SPAC17C9.06 |sam50||SAM complex subunit Sam50 |Schizosaccharomyc...    25   7.9  

>SPCC18.16c |fmn1||riboflavin kinase Fmn1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 163

 Score = 69.7 bits (163), Expect = 4e-13
 Identities = 35/76 (46%), Positives = 48/76 (63%)
 Frame = +2

Query: 302 KMSSVLPFFLEGEVVKGFGRGSKELGCPTANYPLEVVKSLPKGLEPGVYYGWAQVDTGPV 481
           K+ S  P   EG+VV GFGRGSKELG PTAN   + ++ L +  + GVY+G+A V    V
Sbjct: 17  KVQSPYPIRFEGKVVHGFGRGSKELGIPTANISEDAIQELLRYRDSGVYFGYAMVQK-RV 75

Query: 482 YEMVANIGWVLFTKIK 529
           + MV ++GW  + K K
Sbjct: 76  FPMVMSVGWNPYYKNK 91



 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 15/41 (36%), Positives = 26/41 (63%)
 Frame = +1

Query: 511 PFYQNKEMSVETHIMHNFQGDFYGSNLKIALIGYLRGEKNF 633
           P+Y+NK  S E H++     DFY   +++ ++GY+R E N+
Sbjct: 86  PYYKNKLRSAEVHLIERQGEDFYEEIMRVIVLGYIRPELNY 126


>SPBC3D6.07 |gpi3||pig-A|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 456

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -2

Query: 175 IHLGHKLRMI*VIYNDNLKVIKIHRLIITNYKPYHSHNLETT 50
           I LGHK+ +I   Y D + V  +   +   Y P H+   ETT
Sbjct: 25  IDLGHKVIVITHAYKDRVGVRYLTNGLTVYYVPLHTVYRETT 66


>SPCC757.05c |||acetylornithine deacetylase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 400

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 8/39 (20%), Positives = 25/39 (64%)
 Frame = +2

Query: 242 VHSFILSKKKNRMKIFFQLRKMSSVLPFFLEGEVVKGFG 358
           V++++ S++  ++ +   +  ++  LP+++EG+ + G G
Sbjct: 111 VYAYLGSQRNTKVVLTSHIDTVNPFLPYYIEGDKIHGRG 149


>SPMIT.02 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 384

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/41 (24%), Positives = 23/41 (56%)
 Frame = -2

Query: 499 ICYHLIYRSCVNLSPSIINTWLQTFW*RFYNFQRIISCWAS 377
           +C+ L+YR+  +    ++  +L   +   + F R+ SC++S
Sbjct: 59  LCFFLVYRTTYSFGVCLMKRFLFNKFFNRHPFTRVKSCFSS 99


>SPAC17C9.06 |sam50||SAM complex subunit Sam50 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 475

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +1

Query: 547 HIMHNFQGDFYGSNLKIALIGYLRGEKNF 633
           H+M   +GD+    L++A  G+L G+ +F
Sbjct: 277 HLMIPTKGDYVRQTLELAGFGFLPGDASF 305


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,967,017
Number of Sequences: 5004
Number of extensions: 65513
Number of successful extensions: 163
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)