Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0452
         (698 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45559| Best HMM Match : FAD_Synth (HMM E-Value=1.8)                 55   5e-08
SB_54| Best HMM Match : Actin (HMM E-Value=0)                          29   4.8  
SB_15981| Best HMM Match : Defensin_2 (HMM E-Value=1.1)                28   8.4  

>SB_45559| Best HMM Match : FAD_Synth (HMM E-Value=1.8)
          Length = 714

 Score = 55.2 bits (127), Expect = 5e-08
 Identities = 23/47 (48%), Positives = 30/47 (63%)
 Frame = +2

Query: 368 KELGCPTANYPLEVVKSLPKGLEPGVYYGWAQVDTGPVYEMVANIGW 508
           ++  C T NYP E+V      L  G+Y GWA VD GPVY+MV ++GW
Sbjct: 91  RKQSCKT-NYPEELVDQFGSSLGTGIYCGWASVDNGPVYKMVMSVGW 136



 Score = 29.9 bits (64), Expect = 2.1
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +2

Query: 326 FLEGEVVKGFGRGSKELGCPTANYP 400
           FL G VV+G  RG ++LG PT   P
Sbjct: 7   FLRGRVVRGKKRGGEQLGIPTGVTP 31


>SB_54| Best HMM Match : Actin (HMM E-Value=0)
          Length = 2486

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -2

Query: 661 LLYESIPDN*SSSLPSDTQLEQFLN*NHRNHPGN 560
           +++E  PDN   ++P D  ++  LN  H  HPGN
Sbjct: 862 IVFELSPDN---TMPQDKHIQIQLNGTHPPHPGN 892


>SB_15981| Best HMM Match : Defensin_2 (HMM E-Value=1.1)
          Length = 890

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +1

Query: 259 K*KKESHENIFSIEENVISSAFFP--*RRGSQGFW 357
           K ++ SHE++FS  +N  SS   P   RRG   FW
Sbjct: 481 KGEEPSHEDVFSTSDNETSSDSIPRSPRRGMLEFW 515


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,803,435
Number of Sequences: 59808
Number of extensions: 441007
Number of successful extensions: 979
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 979
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)