Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0452
         (698 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY071393-1|AAL49015.1|  153|Drosophila melanogaster RE45482p pro...   110   2e-24
AF017096-2|AAC39087.1|  153|Drosophila melanogaster protein ( Dr...   110   2e-24
AE014297-670|AAF54164.1|  153|Drosophila melanogaster CG2846-PA ...   110   2e-24
AY060898-1|AAL28446.1|  153|Drosophila melanogaster GM04958p pro...   109   4e-24

>AY071393-1|AAL49015.1|  153|Drosophila melanogaster RE45482p
           protein.
          Length = 153

 Score =  110 bits (264), Expect = 2e-24
 Identities = 48/68 (70%), Positives = 55/68 (80%)
 Frame = +2

Query: 305 MSSVLPFFLEGEVVKGFGRGSKELGCPTANYPLEVVKSLPKGLEPGVYYGWAQVDTGPVY 484
           M S LP F  GE+V+GFGRGSKELG PTAN+PLEVVKSLP+ L  G YYGWA VD GPV+
Sbjct: 1   MLSQLPLFAGGEIVRGFGRGSKELGIPTANFPLEVVKSLPESLPTGAYYGWANVDNGPVH 60

Query: 485 EMVANIGW 508
           +MV +IGW
Sbjct: 61  KMVLSIGW 68



 Score = 64.9 bits (151), Expect = 1e-10
 Identities = 26/44 (59%), Positives = 34/44 (77%)
 Frame = +1

Query: 511 PFYQNKEMSVETHIMHNFQGDFYGSNLKIALIGYLRGEKNFNCL 642
           PFY NKE SVETH++H+F  D YG  LKI ++GYLR E++F+ L
Sbjct: 70  PFYNNKEKSVETHMLHDFNCDLYGQTLKICIVGYLRPERSFDSL 113


>AF017096-2|AAC39087.1|  153|Drosophila melanogaster protein (
           Drosophila melanogasterprophosphoribosylamidotransferase
           (Prat) gene, completecds. ).
          Length = 153

 Score =  110 bits (264), Expect = 2e-24
 Identities = 48/68 (70%), Positives = 55/68 (80%)
 Frame = +2

Query: 305 MSSVLPFFLEGEVVKGFGRGSKELGCPTANYPLEVVKSLPKGLEPGVYYGWAQVDTGPVY 484
           M S LP F  GE+V+GFGRGSKELG PTAN+PLEVVKSLP+ L  G YYGWA VD GPV+
Sbjct: 1   MLSQLPLFAGGEIVRGFGRGSKELGIPTANFPLEVVKSLPESLPTGAYYGWANVDNGPVH 60

Query: 485 EMVANIGW 508
           +MV +IGW
Sbjct: 61  KMVLSIGW 68



 Score = 64.9 bits (151), Expect = 1e-10
 Identities = 26/44 (59%), Positives = 34/44 (77%)
 Frame = +1

Query: 511 PFYQNKEMSVETHIMHNFQGDFYGSNLKIALIGYLRGEKNFNCL 642
           PFY NKE SVETH++H+F  D YG  LKI ++GYLR E++F+ L
Sbjct: 70  PFYNNKEKSVETHMLHDFNCDLYGQTLKICIVGYLRPERSFDSL 113


>AE014297-670|AAF54164.1|  153|Drosophila melanogaster CG2846-PA
           protein.
          Length = 153

 Score =  110 bits (264), Expect = 2e-24
 Identities = 48/68 (70%), Positives = 55/68 (80%)
 Frame = +2

Query: 305 MSSVLPFFLEGEVVKGFGRGSKELGCPTANYPLEVVKSLPKGLEPGVYYGWAQVDTGPVY 484
           M S LP F  GE+V+GFGRGSKELG PTAN+PLEVVKSLP+ L  G YYGWA VD GPV+
Sbjct: 1   MLSQLPLFAGGEIVRGFGRGSKELGIPTANFPLEVVKSLPESLPTGAYYGWANVDNGPVH 60

Query: 485 EMVANIGW 508
           +MV +IGW
Sbjct: 61  KMVLSIGW 68



 Score = 64.9 bits (151), Expect = 1e-10
 Identities = 26/44 (59%), Positives = 34/44 (77%)
 Frame = +1

Query: 511 PFYQNKEMSVETHIMHNFQGDFYGSNLKIALIGYLRGEKNFNCL 642
           PFY NKE SVETH++H+F  D YG  LKI ++GYLR E++F+ L
Sbjct: 70  PFYNNKEKSVETHMLHDFNCDLYGQTLKICIVGYLRPERSFDSL 113


>AY060898-1|AAL28446.1|  153|Drosophila melanogaster GM04958p
           protein.
          Length = 153

 Score =  109 bits (262), Expect = 4e-24
 Identities = 47/68 (69%), Positives = 55/68 (80%)
 Frame = +2

Query: 305 MSSVLPFFLEGEVVKGFGRGSKELGCPTANYPLEVVKSLPKGLEPGVYYGWAQVDTGPVY 484
           M S LP F  GE+V+GFGRGSKE+G PTAN+PLEVVKSLP+ L  G YYGWA VD GPV+
Sbjct: 1   MLSQLPLFAGGEIVRGFGRGSKEMGIPTANFPLEVVKSLPESLPTGAYYGWANVDNGPVH 60

Query: 485 EMVANIGW 508
           +MV +IGW
Sbjct: 61  KMVLSIGW 68



 Score = 64.9 bits (151), Expect = 1e-10
 Identities = 26/44 (59%), Positives = 34/44 (77%)
 Frame = +1

Query: 511 PFYQNKEMSVETHIMHNFQGDFYGSNLKIALIGYLRGEKNFNCL 642
           PFY NKE SVETH++H+F  D YG  LKI ++GYLR E++F+ L
Sbjct: 70  PFYNNKEKSVETHMLHDFNCDLYGQTLKICIVGYLRPERSFDSL 113


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,820,656
Number of Sequences: 53049
Number of extensions: 640524
Number of successful extensions: 1492
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1492
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3067209849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)