Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0452
         (698 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               25   0.91 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   1.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   1.6  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    23   3.7  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   4.9  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   4.9  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   8.5  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 24.6 bits (51), Expect = 0.91
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +1

Query: 403 GSCKIFTKRFGARCLLWMG 459
           GS +++TK  GA+ LL MG
Sbjct: 152 GSWEVYTKGIGAKLLLQMG 170


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +2

Query: 374 LGCPTANYPLEVVK 415
           L CP A YP+E +K
Sbjct: 538 LKCPVAGYPIEEIK 551


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +2

Query: 374 LGCPTANYPLEVVK 415
           L CP A YP+E +K
Sbjct: 538 LKCPVAGYPIEEIK 551


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +1

Query: 574 FYGSNLKIALIGYLRGEKNFNCLGCSHRANSRRYKKF 684
           + G N   ALI Y   + +F  L  S  A+  RY  F
Sbjct: 202 YIGDNEGFALIIYNNSDNSFQRLTSSTFASDPRYTTF 238


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = -1

Query: 500 YLLPSHIQVLCQLEPIHNKHLAPNLLVKILQL 405
           YL   H+++    E  HNK L    + K L +
Sbjct: 785 YLCAGHVRLPYTFEQFHNKELLWTSVKKALMI 816


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = -1

Query: 500 YLLPSHIQVLCQLEPIHNKHLAPNLLVKILQL 405
           YL   H+++    E  HNK L    + K L +
Sbjct: 823 YLCAGHVRLPYTFEQFHNKELLWTSVKKALMI 854


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 318 RTDDIFLN*KNIFMRFFFLL 259
           R   +FLN  ++FMR F L+
Sbjct: 264 RKATLFLNMASVFMRIFNLI 283


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,875
Number of Sequences: 438
Number of extensions: 4931
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)